View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_low_5 (Length: 537)
Name: NF17906_low_5
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 519
Target Start/End: Complemental strand, 20132674 - 20132172
Alignment:
| Q |
17 |
cataggaaccggcaactgtattggaagaacgaccgacatcaccatcatcaacaagcttagccaagccaaaatcagcaatataaggttcaaattcaagtcc |
116 |
Q |
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| T |
20132674 |
cataggaaccggcaactgtattggaagaacgaccgacatcaccatcatcaacaagcttagccaagccaaaatcagcaatataaggttcaaattcaagtcc |
20132575 |
T |
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| Q |
117 |
aatcaagatgttattggctttaatatctctgtggactataggaggaacacagtcatgatgcagatatgcaagtccttctgcagaacctagcagaattcgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
20132574 |
aatcaagatgttattggctttaatatctctgtggactataggaggaacacagtcatgatgtagatatgcaagtccttctgcagaacctaacagaattcgg |
20132475 |
T |
|
| Q |
217 |
aacctaagttcccaatcaagagagcttccagttctctcatgaagtacactgcttaaacttccatttggcatataatcaaaaataagcaatcttgttttct |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20132474 |
aacctaagttcccaatcaagagagcttccagtcctctcatgaagtacactgcttaaacttccatttggcatataatcaaaaataagcaatcttgttttct |
20132375 |
T |
|
| Q |
317 |
tgttccaacaacaacctaagaacctgacaatgttcttatggcggatcgatccaagtgctttgacctcagctgagaacgagtctcgaactccacttttata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20132374 |
tgttccaacaacaacctaagaacctgacaatgttcttatgacggatcgatccaagtgctttgacctcagctgagaacgagtctcgaactccacttttata |
20132275 |
T |
|
| Q |
417 |
atccttcaatgcctctccttcatcagttgttataggccacagtttctttactgcaatgacttcaccgttatccatttcacctcgataaacaacaccagag |
516 |
Q |
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| T |
20132274 |
atccttcaacgcctctccttcatcagttgctataggccacagtttcttcactgcaatgacttcaccattatccatttcacctcgataaacaacaccggag |
20132175 |
T |
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| Q |
517 |
cat |
519 |
Q |
| |
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||| |
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| T |
20132174 |
cat |
20132172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 58 - 173
Target Start/End: Complemental strand, 21468650 - 21468535
Alignment:
| Q |
58 |
ccatcatcaacaagcttagccaagccaaaatcagcaatataaggttcaaattcaagtccaatcaagatgttattggctttaatatctctgtggactatag |
157 |
Q |
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|||||||||||||| || || | ||||||||||| || || |||||||||||||| || || | |||||| ||||| |||||||||||||| || |||| |
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| T |
21468650 |
ccatcatcaacaagtttcgcaagtccaaaatcagctatgtatggttcaaattcaagacctatgaggatgttgttggccttaatatctctgtgaacaatag |
21468551 |
T |
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| Q |
158 |
gaggaacacagtcatg |
173 |
Q |
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| T |
21468550 |
gaggagcacaatcatg |
21468535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 4196840 - 4196759
Alignment:
| Q |
120 |
caagatgttattggctttaatatctctgtggactataggaggaacacagtcatgatgcagatatgcaagtccttctgcagaa |
201 |
Q |
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|||||||||||| | ||||| |||||| || || ||||||||||||||||||||||||||||| | || |||||||||||| |
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| T |
4196840 |
caagatgttattagatttaacatctctatgaacaataggaggaacacagtcatgatgcagataagagaggccttctgcagaa |
4196759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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