View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_low_6 (Length: 467)
Name: NF17906_low_6
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Original strand, 3005949 - 3006380
Alignment:
| Q |
20 |
acatatatatattgaaagtccaaagtgtataatcaattcaattcacttcactaagaaaatgtcagggagtggcatatttgcagagattatagatggtgat |
119 |
Q |
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| T |
3005949 |
acatatatatattgaaagtccaaagtgtataatcaattcaattcacttcactaagaaaatgtcagggagtggcatatttgcagagattatagatggtgat |
3006048 |
T |
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| Q |
120 |
gttttcaactactatgcagatgggaagtggaacaaatcctcctctggaaaatttgttcctatcatcaatccaaccactagaaaaatccatttcaaggtcc |
219 |
Q |
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| T |
3006049 |
gttttcaactactatgcagatgggaagtggaacaaatcctcttctggaaaatttgttcctatcatcaatccaaccactagaaaaatccatttcaaggtcc |
3006148 |
T |
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| Q |
220 |
aaggtacatgacatattatatatttaccctttttctctcaacctcaaaatttaccttcaatctttacactttaccggccgattctatgatgcacaagtga |
319 |
Q |
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| T |
3006149 |
aaggtacatgacatattatatatttaccctttttctctcaacctcaaaatttaccttcaatctttacactttaccggccgattctatgatgcacaagtga |
3006248 |
T |
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| Q |
320 |
gataaatcttacaccgtgcatatacttatttctactatatatttgatcgataagtctaaccattggatcaaaagtgatattatgcgagttattgatctaa |
419 |
Q |
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| T |
3006249 |
gataaatcttacaccgtgcatatacttatttctactatatatttgatcgataagtctaaccattggatcaaaagtgatattatgcgagttattgatctaa |
3006348 |
T |
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| Q |
420 |
tggtcgaaaatatatttgtgcatggtgcaaaa |
451 |
Q |
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| T |
3006349 |
tggtcgaaaatatatttgtgcatggtgcaaaa |
3006380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 447
Target Start/End: Complemental strand, 6126183 - 6126114
Alignment:
| Q |
378 |
accattggatcaaaagtgatattatgcgagttattgatctaatggtcgaaaatatatttgtgcatggtgc |
447 |
Q |
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| T |
6126183 |
accattggatcaaatgtgatatgatgtgatttattgatcgaatggtagaaaacatacttgtgcgtggtgc |
6126114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 30918153 - 30918105
Alignment:
| Q |
381 |
attggatcaaaagtgatattatgcgagttattgatctaatggtcgaaaa |
429 |
Q |
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| T |
30918153 |
attggatcaaatgagatattatgtgagttattgatctaatggtagaaaa |
30918105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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