View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_low_7 (Length: 436)
Name: NF17906_low_7
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 188 - 387
Target Start/End: Complemental strand, 39492642 - 39492447
Alignment:
| Q |
188 |
catggttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatattaattaccctacatccgtgaataaattgtgagtgatctgatct |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
39492642 |
catggttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatatta----ccctgcatccgtgaataaattgtgagtgatctgatct |
39492547 |
T |
|
| Q |
288 |
tatattaccttgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
387 |
Q |
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| T |
39492546 |
tatattaccctgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
39492447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 39493081 - 39492908
Alignment:
| Q |
23 |
tggctgtgatattaatagcattattatcatttttctgtacaatagttagcata----ttagaagttttagcaattaaaggaagattgcaaagaaactcta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39493081 |
tggctgtgatattaatagcattattatcatttttctgtacaatagttagcatacatattagaagttttagcaattaaaggaagattgcaaagaagctcta |
39492982 |
T |
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| Q |
119 |
atttatatttttgttagtgaaacgattaataatttaatttctcaagcatattgaggttcatttctgcctcatgg |
192 |
Q |
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| T |
39492981 |
atttatatttttgttagtgaaacgattaataatttaatttctcaagcatattgaggttcatttctgcctcatgg |
39492908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 188 - 387
Target Start/End: Original strand, 35839618 - 35839813
Alignment:
| Q |
188 |
catggttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatattaattaccctacatccgtgaataaattgtgagtgatctgatct |
287 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
35839618 |
catggttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatatta----ccctgcatccgtgaataaattgtgagtgatctgatct |
35839713 |
T |
|
| Q |
288 |
tatattaccttgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
387 |
Q |
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| T |
35839714 |
tatattaccctgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
35839813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 35839179 - 35839352
Alignment:
| Q |
23 |
tggctgtgatattaatagcattattatcatttttctgtacaatagttagcata----ttagaagttttagcaattaaaggaagattgcaaagaaactcta |
118 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35839179 |
tggctgtgatattaatagcattattatcatttttctgtacaatagttagcatacatattagaagttttagcaattaaaggaagattgcaaagaagctcta |
35839278 |
T |
|
| Q |
119 |
atttatatttttgttagtgaaacgattaataatttaatttctcaagcatattgaggttcatttctgcctcatgg |
192 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35839279 |
atttatatttttgttagtgaaacgattaataatttaatttctcaagcatattgaggttcatttctgcctcatgg |
35839352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 188 - 387
Target Start/End: Complemental strand, 47710176 - 47709981
Alignment:
| Q |
188 |
catggttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatattaattaccctacatccgtgaataaattgtgagtgatctgatct |
287 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
47710176 |
catggttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatatta----ccctgcatccgtgaataaattgtgagtgatctgatct |
47710081 |
T |
|
| Q |
288 |
tatattaccttgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
387 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47710080 |
tatattaccctatgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
47709981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 47710620 - 47710442
Alignment:
| Q |
18 |
agtagtggctgtgatattaatagcattattatcatttttctgtacaatagttagcata----ttagaagttttagcaattaaaggaagattgcaaagaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47710620 |
agtagtggctgtgatattaatagcattattatcatttttctgtacaatagttagcatacatattagaagttttagcaattaaaggaagattgcaaagaag |
47710521 |
T |
|
| Q |
114 |
ctctaatttatatttttgttagtgaaacgattaataatttaatttctcaagcatattgaggttcatttctgcctcatgg |
192 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47710520 |
ctctaatttatatttttgttagtgaagcgattaataatttaatttctcaagcatattgaggttcatttctgcctcatgg |
47710442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 388 - 420
Target Start/End: Complemental strand, 47709946 - 47709914
Alignment:
| Q |
388 |
gagtttgaggttagtgtggagaagagaaaaaat |
420 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
47709946 |
gagtttgaggttagtgtggagaagagaaaaaat |
47709914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 5031464 - 5031420
Alignment:
| Q |
148 |
taatttaatttctcaagcatattgaggttcatttctgcctcatgg |
192 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5031464 |
taatttaatttctcaagcatattgaggttcatttctacctcatgg |
5031420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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