View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17907_high_19 (Length: 312)

Name: NF17907_high_19
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17907_high_19
NF17907_high_19
[»] chr4 (4 HSPs)
chr4 (238-306)||(14438131-14438199)
chr4 (144-186)||(35730878-35730920)
chr4 (144-214)||(35730951-35731021)
chr4 (144-186)||(48507539-48507581)
[»] chr1 (9 HSPs)
chr1 (144-186)||(46364893-46364935)
chr1 (144-186)||(37152755-37152797)
chr1 (145-186)||(2953682-2953723)
chr1 (146-214)||(35312266-35312334)
chr1 (144-186)||(12577330-12577372)
chr1 (144-214)||(24701559-24701629)
chr1 (144-186)||(33347734-33347776)
chr1 (144-177)||(34176140-34176173)
chr1 (144-192)||(46364598-46364646)
[»] chr5 (8 HSPs)
chr5 (144-214)||(8323346-8323416)
chr5 (144-213)||(18934737-18934806)
chr5 (144-186)||(6421940-6421982)
chr5 (144-187)||(12628339-12628382)
chr5 (144-214)||(21260889-21260959)
chr5 (144-186)||(25253211-25253253)
chr5 (144-186)||(25317001-25317043)
chr5 (144-193)||(6421646-6421695)
[»] chr6 (14 HSPs)
chr6 (145-214)||(20774114-20774183)
chr6 (157-214)||(1066429-1066486)
chr6 (157-214)||(7612585-7612642)
chr6 (145-186)||(20774214-20774255)
chr6 (144-186)||(3299583-3299625)
chr6 (144-186)||(3299877-3299919)
chr6 (144-186)||(7612673-7612715)
chr6 (144-186)||(16706969-16707011)
chr6 (144-186)||(20561144-20561186)
chr6 (144-186)||(22494005-22494047)
chr6 (144-186)||(22494198-22494240)
chr6 (146-186)||(5064361-5064401)
chr6 (146-182)||(7612871-7612907)
chr6 (146-214)||(31386825-31386893)
[»] chr3 (7 HSPs)
chr3 (146-186)||(40257191-40257231)
chr3 (144-186)||(49673-49715)
chr3 (144-186)||(24576312-24576354)
chr3 (144-190)||(30654508-30654554)
chr3 (144-186)||(30890332-30890374)
chr3 (144-186)||(40256898-40256940)
chr3 (146-214)||(46670545-46670613)
[»] chr8 (7 HSPs)
chr8 (144-214)||(9632352-9632422)
chr8 (146-186)||(40525825-40525865)
chr8 (144-186)||(9632621-9632663)
chr8 (144-186)||(11478169-11478211)
chr8 (144-198)||(27436587-27436641)
chr8 (144-186)||(37343100-37343142)
chr8 (158-198)||(27437541-27437581)
[»] chr2 (3 HSPs)
chr2 (144-214)||(9694032-9694102)
chr2 (144-186)||(1150255-1150297)
chr2 (144-186)||(32519179-32519221)
[»] chr7 (7 HSPs)
chr7 (118-186)||(5636343-5636411)
chr7 (144-186)||(19980211-19980253)
chr7 (144-186)||(27557973-27558015)
chr7 (144-186)||(45586588-45586630)
chr7 (145-186)||(5636150-5636191)
chr7 (145-186)||(20947318-20947359)
chr7 (146-214)||(27557874-27557942)
[»] scaffold0279 (2 HSPs)
scaffold0279 (144-186)||(11074-11116)
scaffold0279 (146-214)||(11147-11215)
[»] scaffold0202 (2 HSPs)
scaffold0202 (144-186)||(14259-14301)
scaffold0202 (146-186)||(14552-14592)
[»] scaffold0022 (1 HSPs)
scaffold0022 (144-186)||(120324-120366)
[»] scaffold0321 (1 HSPs)
scaffold0321 (144-193)||(10973-11022)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 14438199 - 14438131
Alignment:
Q  238 cttgttcgattatgaaaaaccacttaagtatgttgttcgattctagatttcttgtttgtttatattctt 306  Q
    ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  14438199 cttgttcgattctgaaaaaccacttaagtatgttgttcgattttggatttcttgtttgtttatattctt 14438131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 35730878 - 35730920
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  35730878 gcaaatataggtcatttgaattttcgtccttgaagttactaat 35730920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 35731021 - 35730951
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    ||||||||| || |||||||||||||||| |||| ||||||||  || |||| ||| ||| ||||||||||    
T  35731021 gcaaatataggtcatttgaattttcgtccctgaagttactaatccttccattatgtcattgcaaatattaa 35730951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 48507581 - 48507539
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||||| |||||||||||||||| |||| ||||||||    
T  48507581 gcaaatataagtcatttgaattttcgtccctgaagttactaat 48507539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 46364935 - 46364893
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46364935 gcaaatataagttatttgaattttcgtccttgaaattactaat 46364893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 37152755 - 37152797
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||||| ||||||||||||||||||||| ||||||||    
T  37152755 gcaaatataagtcatttgaattttcgtccttgaagttactaat 37152797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 2953682 - 2953723
Alignment:
Q  145 caaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  2953682 caaatataagtcatttgaattttcgtccttgaagttactaat 2953723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 35312334 - 35312266
Alignment:
Q  146 aaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    |||||||  ||||||||||||||||||||| | ||||||||  || |||||||| ||| ||||||||||    
T  35312334 aaatatatcttatttgaattttcgtccttggagttactaatccttccattttgtcattgcaaatattaa 35312266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 12577372 - 12577330
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||||| |||| |||||||||||||||| ||||||||    
T  12577372 gcaaatataagtcatttaaattttcgtccttgaagttactaat 12577330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 24701629 - 24701559
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    |||||||||||  |||||||||||||||| |||| ||||||||  || |||||||  ||| ||||||||||    
T  24701629 gcaaatataagccatttgaattttcgtccctgaagttactaatccttccattttgccattacaaatattaa 24701559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 33347776 - 33347734
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  33347776 gcaaatataggtcatttgaattttcgtccttgaagttactaat 33347734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 34176140 - 34176173
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaa 177  Q
    |||||||||||| |||||||||||||||||||||    
T  34176140 gcaaatataagtcatttgaattttcgtccttgaa 34176173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 46364598 - 46364646
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattttc 192  Q
    ||||||||| || |||||||||||||||| |||| |||||||| |||||    
T  46364598 gcaaatataggtcatttgaattttcgtccctgaagttactaatcttttc 46364646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 8323416 - 8323346
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    ||||||||| | |||||||||||||||||||||| ||||||||  ||||||||||  ||| ||||||||||    
T  8323416 gcaaatatatgctatttgaattttcgtccttgaagttactaattctttcattttgccattgcaaatattaa 8323346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 18934737 - 18934806
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatatta 213  Q
    |||||||||||| |||||||||||||||| |||| ||||||||  ||||||||||  ||| |||||||||    
T  18934737 gcaaatataagtcatttgaattttcgtccatgaagttactaatcctttcattttgccattgcaaatatta 18934806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 6421982 - 6421940
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  6421982 gcaaatataagtcatttgaattttcgtccctgaaattactaat 6421940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 12628382 - 12628339
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaata 187  Q
    |||||||||||| |||||||||||||||| |||| |||||||||    
T  12628382 gcaaatataagtgatttgaattttcgtccctgaagttactaata 12628339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 21260889 - 21260959
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    ||||||||| || |||||||||||||||| |||| ||||||||  || |||||||  ||| ||||||||||    
T  21260889 gcaaatataggtcatttgaattttcgtccctgaagttactaatccttccattttgccattgcaaatattaa 21260959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 25253253 - 25253211
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  25253253 gcaaatataggtcatttgaattttcgtccttgaagttactaat 25253211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 25317043 - 25317001
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  25317043 gcaaatataggtcatttgaattttcgtccttgaagttactaat 25317001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 6421646 - 6421695
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattttca 193  Q
    ||||||||| || ||||||||||| ||||||||| |||||||| ||||||    
T  6421646 gcaaatatatgtcatttgaatttttgtccttgaagttactaatcttttca 6421695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 20774114 - 20774183
Alignment:
Q  145 caaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    |||||||| || ||||||||||||||||||||| ||| ||||  ||||||||||| ||| ||||||||||    
T  20774114 caaatatatgtcatttgaattttcgtccttgaagttattaatcctttcattttgtcattgcaaatattaa 20774183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 1066486 - 1066429
Alignment:
Q  157 atttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    |||||||||||||||| |||| |||||||||||| |||||||  ||| ||||||||||    
T  1066486 atttgaattttcgtccctgaagttactaatatttccattttgccattgcaaatattaa 1066429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 7612585 - 7612642
Alignment:
Q  157 atttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    |||||||||||||||| |||| ||||||||  ||||||||||| ||| ||||||||||    
T  7612585 atttgaattttcgtccctgaagttactaattctttcattttgtcattgcaaatattaa 7612642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 20774255 - 20774214
Alignment:
Q  145 caaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  20774255 caaatataagtcatttgaattttcgtccatgaaattactaat 20774214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 3299583 - 3299625
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||||| |||||||||||||||| |||| ||||||||    
T  3299583 gcaaatataagtcatttgaattttcgtccatgaagttactaat 3299625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 3299919 - 3299877
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  3299919 gcaaatataggtcatttgaattttcgtccttgaagttactaat 3299877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 7612715 - 7612673
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||||| |||||||||||||||| || ||||||||||    
T  7612715 gcaaatataagtcatttgaattttcgtccctggaattactaat 7612673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 16707011 - 16706969
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  16707011 gcaaatataggtcatttgaattttcgtccttgaagttactaat 16706969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 20561144 - 20561186
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  20561144 gcaaatataggtcatttgaattttcgtccttgaagttactaat 20561186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 22494047 - 22494005
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| ||||||||||||||||||| |||| ||||||||    
T  22494047 gcaaatataggttatttgaattttcgtccctgaagttactaat 22494005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 22494240 - 22494198
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  22494240 gcaaatataggtcatttgaattttcgtccttgaagttactaat 22494198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 5064361 - 5064401
Alignment:
Q  146 aaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||| |||||||||||||||| |||| ||||||||    
T  5064361 aaatataagtcatttgaattttcgtccctgaagttactaat 5064401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 7612907 - 7612871
Alignment:
Q  146 aaatataagttatttgaattttcgtccttgaaattac 182  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  7612907 aaatataagctatttgaattttcgtccctgaaattac 7612871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 31386825 - 31386893
Alignment:
Q  146 aaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    ||||||| | ||||||||| |||||||||||| || |||||  || ||||||| |||| ||||||||||    
T  31386825 aaatataggatatttgaatattcgtccttgaagttgctaatccttccattttgcaattgcaaatattaa 31386893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 40257231 - 40257191
Alignment:
Q  146 aaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  40257231 aaatataagttatttgaattttcgtccctgaaattactaat 40257191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 49673 - 49715
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||||| |||||||| |||||||| |||||||||||||    
T  49673 gcaaatataagctatttgaaatttcgtccctgaaattactaat 49715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 24576312 - 24576354
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  24576312 gcaaatataagccatttgaattttcgtccatgaaattactaat 24576354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 30654508 - 30654554
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattt 190  Q
    ||||||||||||  |||||| ||||||||||||| ||||||||||||    
T  30654508 gcaaatataagtcgtttgaaatttcgtccttgaagttactaatattt 30654554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 30890374 - 30890332
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||||| |||||||||||||||| |||| ||||||||    
T  30890374 gcaaatataagtcatttgaattttcgtccctgaagttactaat 30890332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 40256898 - 40256940
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| ||||||||||||||||||| |||| ||||||||    
T  40256898 gcaaatataggttatttgaattttcgtccctgaagttactaat 40256940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 46670613 - 46670545
Alignment:
Q  146 aaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    ||||||| || |||||||||||| ||| |||| ||||||||  || |||||||| ||| ||||||||||    
T  46670613 aaatataggtcatttgaattttcatccctgaagttactaattcttccattttgtcattgcaaatattaa 46670545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 9632352 - 9632422
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    ||||||||| || |||||||||||||||| |||| ||||||||  || |||||||| ||| ||||||||||    
T  9632352 gcaaatataggtcatttgaattttcgtccctgaagttactaatccttccattttgtcattgcaaatattaa 9632422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 40525865 - 40525825
Alignment:
Q  146 aaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  40525865 aaatataggttatttgaattttcgtccctgaaattactaat 40525825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 9632663 - 9632621
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  9632663 gcaaatataggtcatttgaattttcgtccttgaagttactaat 9632621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 11478169 - 11478211
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  11478169 gcaaatataggtcatttgaattttcgtccttgaagttactaat 11478211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 27436587 - 27436641
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattttcattttg 198  Q
    ||||||||| ||  ||||||||||||||| |||| |||||||| |||||||||||    
T  27436587 gcaaatataggtcgtttgaattttcgtccctgaagttactaatcttttcattttg 27436641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 37343142 - 37343100
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || |||||||||||||||| |||||||||||||    
T  37343142 gcaaatataggtcatttgaattttcgtccctgaaattactaat 37343100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 27437581 - 27437541
Alignment:
Q  158 tttgaattttcgtccttgaaattactaatattttcattttg 198  Q
    ||||||||||||||| |||| |||||||| |||||||||||    
T  27437581 tttgaattttcgtccctgaagttactaatcttttcattttg 27437541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 9694102 - 9694032
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    ||||||||| || |||||||||||||||| |||| ||||||||  || |||||||| ||| ||||||||||    
T  9694102 gcaaatataggtcatttgaattttcgtccctgaagttactaatccttccattttgtcattgcaaatattaa 9694032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 1150297 - 1150255
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || |||||||||||||||| |||||||||||||    
T  1150297 gcaaatataggtcatttgaattttcgtccctgaaattactaat 1150255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 32519179 - 32519221
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || |||||||||||||||| |||||||||||||    
T  32519179 gcaaatataggtcatttgaattttcgtccctgaaattactaat 32519221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 5636411 - 5636343
Alignment:
Q  118 aaggtttaattaggtttatagtcatggcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| ||||| | | ||| | |||||||||||| |||||||||||||||| |||| ||||||||    
T  5636411 aaggtttaaataggtctttcgtccttgcaaatataagtaatttgaattttcgtccctgaagttactaat 5636343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 19980253 - 19980211
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||    
T  19980253 gcaaatataagtcatttgaatttttgtccttgaagttactaat 19980211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 27558015 - 27557973
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  27558015 gcaaatataggtcatttgaattttcgtccttgaagttactaat 27557973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 45586588 - 45586630
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  45586588 gcaaatataggtcatttgaattttcgtccttgaagttactaat 45586630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 5636191 - 5636150
Alignment:
Q  145 caaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||||| |||||||||||||||| |||| ||||||||    
T  5636191 caaatataagtcatttgaattttcgtccctgaagttactaat 5636150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 20947359 - 20947318
Alignment:
Q  145 caaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||| || ||||||||||||||||||||| ||||||||    
T  20947359 caaatataggtcatttgaattttcgtccttgaagttactaat 20947318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 27557874 - 27557942
Alignment:
Q  146 aaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    ||||||| || ||||||||||||||||||||| ||| ||||  || |||||||  ||| ||||||||||    
T  27557874 aaatataggtcatttgaattttcgtccttgaagttaataattcttccattttgccattgcaaatattaa 27557942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 11074 - 11116
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  11074 gcaaatataggtcatttgaattttcgtccttgaagttactaat 11116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 11215 - 11147
Alignment:
Q  146 aaatataagttatttgaattttcgtccttgaaattactaatattttcattttgtaatttcaaatattaa 214  Q
    ||||||| || ||||||||||||||||||||| ||| ||||  || |||||||  ||| ||||||||||    
T  11215 aaatataggtcatttgaattttcgtccttgaagttaataattcttccattttgccattgcaaatattaa 11147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 14259 - 14301
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    |||||||||||| ||||||||||||||||||||  ||||||||    
T  14259 gcaaatataagtcatttgaattttcgtccttgaggttactaat 14301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 14592 - 14552
Alignment:
Q  146 aaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||| || ||||||||||||||||||||| ||||||||    
T  14592 aaatataggtcatttgaattttcgtccttgaagttactaat 14552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 120366 - 120324
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaat 186  Q
    ||||||||| ||||||||||||||||||| |||| ||||||||    
T  120366 gcaaatatatgttatttgaattttcgtccatgaagttactaat 120324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 11022 - 10973
Alignment:
Q  144 gcaaatataagttatttgaattttcgtccttgaaattactaatattttca 193  Q
    ||||||||| || |||||||||||||||| |||| |||||||| ||||||    
T  11022 gcaaatataggtcatttgaattttcgtccatgaagttactaatcttttca 10973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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