View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17907_high_27 (Length: 230)
Name: NF17907_high_27
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17907_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 27725534 - 27725338
Alignment:
| Q |
17 |
ctatcaccaatttcatttaataattcgcgccaaatttcttctctcggaacaa------ctcgcctccacctcaaatgtcacgccacaaaggaagactcac |
110 |
Q |
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| T |
27725534 |
ctatcaccaatttcatttaataattcgcgccaaatttcttctctcggaacaagtacaactcgcctccacctcaaatgtcacgccacaaaggaagactcac |
27725435 |
T |
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| Q |
111 |
ctcaatccatagaatccacgagaccaaaaagtgaaacaatcttacactctttctctccattgccattactttacgccgctgctctcttacccggagg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27725434 |
ctcaatccatagaatccacgagaccaaaaagtgaaacaatcttacactctttctctccattgccattactttacgccgctgctctcttacccggagg |
27725338 |
T |
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