View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17907_high_6 (Length: 474)
Name: NF17907_high_6
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17907_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 35197597 - 35198043
Alignment:
| Q |
18 |
aagatcaggtgcataaatatagcaaaataaacaataatccatttcta----aaattgggaaaatgaattcatgcaattgggatattcaatattcactcaa |
113 |
Q |
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| T |
35197597 |
aagatcaggtgcataaatatagcaaaataaacaataatccatttctatctaaaattgggaatatgaattcatgcaattgggatattcaacattcactcaa |
35197696 |
T |
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| Q |
114 |
taagtacatcgatgaccgtcagatcaagatctaattgcttatatatattatagattgtgaaccatttggtcttaatccaacggttatcgaagtactaatt |
213 |
Q |
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| T |
35197697 |
taagtacatcgatgaccgtcagattaagatctaattgcttatatatattatagattgtgaaccatttgatcttgatccaacagttatcgaagtactaatt |
35197796 |
T |
|
| Q |
214 |
gtgtgagtgtaatg---ctgaaaatttccggtacttctgtcttgttgttgtcaattgatagcaatagaaagaagaaaaatcaactttgtaaattaaagtg |
310 |
Q |
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| T |
35197797 |
gtgcgagtgtaagatatctcaa----tccgatacttctgtcttgttgttgtcaattgatggcaatagaaagaagaaacatcaactttgtaaattaaagtg |
35197892 |
T |
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| Q |
311 |
tatatattggataagaaaactttctaaatatgatttacatgaatttgttctgcccaacctttttattgtttacaatgcaatcttatatgagtcatgaatt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
35197893 |
tatatattggataagaaaactttctaaatatgatttacatgaatttgttctgcccaacctttttatggtttacaatgcaatcatatatgagtcatgaatt |
35197992 |
T |
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| Q |
411 |
atttccctgactgaaaaccaatccaaactataaatgaggttatttagacca |
461 |
Q |
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| T |
35197993 |
atttccctgaatgaaaaccaacccaaactataaatgagtttatttaaacca |
35198043 |
T |
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