View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17907_low_10 (Length: 402)
Name: NF17907_low_10
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17907_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 5712519 - 5712692
Alignment:
| Q |
81 |
gctggatttggatatcagcagcagcttgttcctgggatgagacctggtggtggtcctatgccaagctacttcgttccaatggttcagcagggccaacaag |
180 |
Q |
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| T |
5712519 |
gctggatttggatatcagcagcagcttgttcctgggatgagacctggtggtggtcctatgccaagctacttcgttccaatggttcagcagggccaacaag |
5712618 |
T |
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| Q |
181 |
gtcagcgccctggtggacgtcgaggaggtcctggtcaacaacccccgcagcaagtgccaatgatgcagcagcag |
254 |
Q |
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| T |
5712619 |
gtcagcgccctggtggacgtcgaggaggtcctggtcaacaacccccgcagcaagtgccaatgatgcagcagcag |
5712692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 252 - 393
Target Start/End: Original strand, 5712782 - 5712923
Alignment:
| Q |
252 |
cagatgcttccaaggcaacgtgtttatcgctaccctcctggtcgcagcaacattcaagatgcccctgtgcaaaacattggtggaggaatgatgtcctatg |
351 |
Q |
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| T |
5712782 |
cagatgcttccaaggcaacgtgtttatcgctaccctcctggtcgcagcaacattcaagatgcccctgtgcaaaacattggtggaggaatgatgtcctatg |
5712881 |
T |
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| Q |
352 |
acatgggaggtttgccacttcacgatgttgtaccacctatgc |
393 |
Q |
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| T |
5712882 |
acatgggaggtttgccacttcgcgatgttgtaccacctatgc |
5712923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 5712122 - 5712185
Alignment:
| Q |
18 |
actcctggtcttggacagcaatttatgtatggtcaaggacccccagccatgatgcctccacaag |
81 |
Q |
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| T |
5712122 |
actcctggtcttggacagcaatttatgtatggtcaaggacccccagccatgatgcctccacaag |
5712185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 254
Target Start/End: Complemental strand, 47004391 - 47004215
Alignment:
| Q |
81 |
gctggatttggatatcagcagcagcttgttcctgggatgagacctggtggtggtcctatgccaagctacttcgttccaatggttcagcagggccaacaag |
180 |
Q |
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| T |
47004391 |
gctggatttggttacccgcagcaactggttcctggaatgagaccaggtggtgctccaatgccaaacttcttcatgcccatggttcagcagggtcaacaag |
47004292 |
T |
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| Q |
181 |
gtcagcgccctggtggacgtcgaggag---gtcctggtcaacaacccccgcagcaagtgccaatgatgcagcagcag |
254 |
Q |
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| T |
47004291 |
gtcagcgtccaggcggacggcggggagcaagtcctatgcaacaactcccgcattcattgccaatgatgcagcagcag |
47004215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 33421777 - 33421892
Alignment:
| Q |
82 |
ctggatttggatatcagcagcagcttgttcctgggatgagacctggtggtggtcctatgccaagctacttcgttccaatggttcagcagggccaacaagg |
181 |
Q |
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|||||||||| ||||| || || ||||| ||||| |||||||||||||| | ||| |||||| || ||| || ||||||||||||||||| || ||||| |
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| T |
33421777 |
ctggatttgggtatcaacaacaacttgtgcctggaatgagacctggtggggcacctgtgccaaacttctttgtgccaatggttcagcagggacagcaagg |
33421876 |
T |
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| Q |
182 |
tcagcgccctggtgga |
197 |
Q |
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| T |
33421877 |
gcagcgtcctggtgga |
33421892 |
T |
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