View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17907_low_11 (Length: 402)

Name: NF17907_low_11
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17907_low_11
NF17907_low_11
[»] chr5 (3 HSPs)
chr5 (36-382)||(16913391-16913739)
chr5 (307-339)||(39933457-39933489)
chr5 (300-339)||(39933561-39933600)
[»] chr3 (3 HSPs)
chr3 (303-339)||(35653141-35653177)
chr3 (300-339)||(36502369-36502408)
chr3 (307-339)||(36496999-36497031)
[»] chr1 (2 HSPs)
chr1 (300-335)||(15248900-15248935)
chr1 (300-339)||(51184538-51184577)
[»] chr7 (2 HSPs)
chr7 (294-339)||(13784888-13784933)
chr7 (294-339)||(23902778-23902823)
[»] scaffold0025 (1 HSPs)
scaffold0025 (307-339)||(150371-150403)
[»] chr4 (1 HSPs)
chr4 (296-332)||(22405800-22405836)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 36 - 382
Target Start/End: Complemental strand, 16913739 - 16913391
Alignment:
Q  36 tcaattactgcaatttctcgcttgtgggttgattataatgctggaattatttgtttataaaaaattagagnnnnnnnnggtaaactaaaaattagagttg 135  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||         |||||||||||||||||||||    
T  16913739 tcaattactgcaatttctcgctcgtgggttgattctaatgctggaattctttgtttataaaaaattggagttttttttagtaaactaaaaattagagttg 16913640  T
Q  136 atnnnnnnnn-tgccttgccccagatctaaaaattcaaattggaatgnnnnnnnn-ggaacagttgcatacaataacatagcaagagaagactaaaatgg 233  Q
    ||         ||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  16913639 ataaaaaaaaatgccttgccccagatctaaaaattcaaattggaatgaaaaaaaaaggaacagttgcatacaataacatagcaagagaagactaaaatgg 16913540  T
Q  234 ctgaagactgaatagatgaaaatgtgacgctgcaattttaaaaacttaacaccatggtacaaatttatccaatggttatgatttaaccctctcatctctc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  16913539 ctgaagactgaatagatgaaaatgtgacgctgcaattttaaaaacttaacaccatggtaaaaatttatccaatggttatgatttaaccccctcatctctc 16913440  T
Q  334 acaatataatattgcttgcttctctggacaaatggaagaccaatcatat 382  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16913439 acaatataatattgcttgcttctctggacaagtggaagaccaatcatat 16913391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 39933489 - 39933457
Alignment:
Q  307 ggttatgatttaaccctctcatctctcacaata 339  Q
    |||||||||||||||||||||||||||||||||    
T  39933489 ggttatgatttaaccctctcatctctcacaata 39933457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 39933561 - 39933600
Alignment:
Q  300 atccaatggttatgatttaaccctctcatctctcacaata 339  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  39933561 atccaagggttatgatttaaccctcttatctctcacaata 39933600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 35653177 - 35653141
Alignment:
Q  303 caatggttatgatttaaccctctcatctctcacaata 339  Q
    ||||||||| |||||||||||||||||||||||||||    
T  35653177 caatggttaggatttaaccctctcatctctcacaata 35653141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 36502369 - 36502408
Alignment:
Q  300 atccaatggttatgatttaaccctctcatctctcacaata 339  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  36502369 atccaatggttaggattaaaccctctcatctctcacaata 36502408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 36497031 - 36496999
Alignment:
Q  307 ggttatgatttaaccctctcatctctcacaata 339  Q
    |||| ||||||||||||||||||||||||||||    
T  36497031 ggttgtgatttaaccctctcatctctcacaata 36496999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 15248935 - 15248900
Alignment:
Q  300 atccaatggttatgatttaaccctctcatctctcac 335  Q
    |||||| |||||||||||||||||||||||||||||    
T  15248935 atccaagggttatgatttaaccctctcatctctcac 15248900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 51184577 - 51184538
Alignment:
Q  300 atccaatggttatgatttaaccctctcatctctcacaata 339  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  51184577 atccaaaggttataatttaaccctctcatctctcacaata 51184538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 13784888 - 13784933
Alignment:
Q  294 aaatttatccaatggttatgatttaaccctctcatctctcacaata 339  Q
    ||||| |||||| ||||||| ||||| |||||||||||||||||||    
T  13784888 aaattgatccaaaggttatggtttaatcctctcatctctcacaata 13784933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 23902823 - 23902778
Alignment:
Q  294 aaatttatccaatggttatgatttaaccctctcatctctcacaata 339  Q
    ||||| |||||| ||||||| ||||| |||||||||||||||||||    
T  23902823 aaattgatccaaaggttatggtttaatcctctcatctctcacaata 23902778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 150403 - 150371
Alignment:
Q  307 ggttatgatttaaccctctcatctctcacaata 339  Q
    ||||||| |||||||||||||||||||||||||    
T  150403 ggttatggtttaaccctctcatctctcacaata 150371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 22405836 - 22405800
Alignment:
Q  296 atttatccaatggttatgatttaaccctctcatctct 332  Q
    |||||||||||||| | ||||||||||||||||||||    
T  22405836 atttatccaatggtcaagatttaaccctctcatctct 22405800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University