View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17907_low_12 (Length: 375)
Name: NF17907_low_12
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17907_low_12 |
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| [»] scaffold0249 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 9 - 359
Target Start/End: Complemental strand, 22616270 - 22615920
Alignment:
| Q |
9 |
gcaaaggtgttttgttttggttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagaagaagctgcaaggtcctaa |
108 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22616270 |
gcaaaggtgttttggtttggttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaa |
22616171 |
T |
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| Q |
109 |
gcactaatgaactattacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgattttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22616170 |
gcactaatgaactattacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgattttt |
22616071 |
T |
|
| Q |
209 |
tgaaaattagggcttatgacaaagcagctatccaaaataatggaagggaagcaatgactaattttgaggccagtacatatgaaggagagatgaaatctgc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22616070 |
tgaaaattagggcttatgacaaagcagctatccaaaataatggaagggaagcaatgactaattttgaggccagtacatatgaaggagagatgaaatctgc |
22615971 |
T |
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| Q |
309 |
agccatcaatgagggtaacaaaccttctatagcacagatcttatttaactt |
359 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22615970 |
agccatcaatgagggtaacaaacattctatagcacagatcttatttaactt |
22615920 |
T |
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Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 41050047 - 41050245
Alignment:
| Q |
9 |
gcaaaggtgttttgttttggttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagaagaagctgcaaggtcctaa |
108 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41050047 |
gcaaaggtgttttggtttggttatagaaattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaa |
41050146 |
T |
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| Q |
109 |
gcactaatgaactattacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgatttt |
207 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||| ||||||| |
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| T |
41050147 |
gcactaatgaattattacattctacctgcactgaatttattacacttgattatcaagctcatttgcaatgcatccaacatgtatctcccttttgatttt |
41050245 |
T |
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Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 21890343 - 21890145
Alignment:
| Q |
9 |
gcaaaggtgttttgttttggttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagaagaagctgcaaggtcctaa |
108 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21890343 |
gcaaaggtgttttagtttggttatagagattgcaatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaa |
21890244 |
T |
|
| Q |
109 |
gcactaatgaactattacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgatttt |
207 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||| ||||||| |
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| T |
21890243 |
gcactaatgaattattacattctacctgcactgaatttattacacttgattatcaagctcatttgcaatgcatccaacatgtatctcccttttgatttt |
21890145 |
T |
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Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 13623481 - 13623676
Alignment:
| Q |
12 |
aaggtgttttgttttggttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagaagaagctgcaaggtcctaagca |
111 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13623481 |
aaggtgttttggtttggttatagagattgcgatgctttcgtgtaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaagca |
13623580 |
T |
|
| Q |
112 |
ctaatgaactattacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgatttt |
207 |
Q |
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|||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||| | |||||||||||||||||| |||| ||||||| |
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| T |
13623581 |
ctaatgaattattacattatacctgcactgaatttattacacttgattaataagctcatttgcaatgcatccaacatgtatctcccttttgatttt |
13623676 |
T |
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Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 11168075 - 11168275
Alignment:
| Q |
9 |
gcaaaggtgttttgttttggttatagagattgcgatgctttcgtgcaggtatatatatcttggg--ttattcgacagtgaagaagaagctgcaaggtcct |
106 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |
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| T |
11168075 |
gcaaaggtgttttggtttggttatagagattgtgatgcttttgtgtaggtatatatatcttgggggttattcgacagtgaagtagaagttgcaaggtcct |
11168174 |
T |
|
| Q |
107 |
aagcactaatgaactattacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgattt |
206 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||| | |||||||||||||||||| |||| |||||| |
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| T |
11168175 |
aagcactaatgaattattacattctacctgcactgaatttattacatttgattatcaagctcatttgcaatgcatccaacatgtatctcccttttgattt |
11168274 |
T |
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| Q |
207 |
t |
207 |
Q |
| |
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| |
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| T |
11168275 |
t |
11168275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 18970 - 19165
Alignment:
| Q |
9 |
gcaaaggtgttttgttttggttatagagattgcgatgctttcgtgcaggtatatatat--cttgggttattcgacagtgaagaagaagctgcaaggtcct |
106 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
18970 |
gcaaaggtgttttggtttggttatagagattgtgatgctttcttgcaggtatatatatatcttgggttattcgacagt-----agaagctgcaaggtcct |
19064 |
T |
|
| Q |
107 |
aagcactaatgaactattacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgattt |
206 |
Q |
| |
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||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||| | |||||||||||||||||| |||| |||||| |
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| T |
19065 |
aagcactaatgaattattacattctacctgcactgaatttattacaattgattatcaagctcatttgcaatgcatccaacatgtatctcccttttgattt |
19164 |
T |
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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 39645178 - 39645256
Alignment:
| Q |
28 |
gttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagaagaagctgcaaggtcct |
106 |
Q |
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|||||||| ||||| ||| |||| ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |
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| T |
39645178 |
gttatagatattgcaatgatttcatgcaggtatatatatcttgggctattcgacagcgaagtagaagctgcaaggtcct |
39645256 |
T |
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