View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17907_low_13 (Length: 371)
Name: NF17907_low_13
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17907_low_13 |
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| [»] scaffold0464 (1 HSPs) |
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| [»] scaffold0242 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 26 - 361
Target Start/End: Original strand, 19637848 - 19638183
Alignment:
| Q |
26 |
gacgtccttcaatcggaaattaggtttgttggctaggttgatggatttgttcttcagtaaacgacacagggagaaacctgcgatgctgaaataactagaa |
125 |
Q |
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| T |
19637848 |
gacgtccttcaatcggaaattaggtttgttggctaggttgatggatttgttcttcagtaaacgacacagggagaaacctgcgatgctgaaataactagaa |
19637947 |
T |
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| Q |
126 |
tgtctgaatatgatcgaaaaaagtgctaggtgcttgtttcttgctgatatcttaaggtgtaatttgacaaaagtgggatcagagatgatggttttccatg |
225 |
Q |
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| T |
19637948 |
tgtctgaataggatcgaaaaaagtgctaggtgcttgtttcttgctgatatcttaaggtgtaatttgacaaaagtgggatcagagatgatggttttccatg |
19638047 |
T |
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| Q |
226 |
acttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgcgcgaaattctagt |
325 |
Q |
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| T |
19638048 |
acttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcgtcagggaggaacacgcgcgaaattctagt |
19638147 |
T |
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| Q |
326 |
tccattgaaggtacgccgcaacttaggttgatgatg |
361 |
Q |
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| T |
19638148 |
tccactgaaggtacgccgcaacttaggttgatgatg |
19638183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 316
Target Start/End: Original strand, 19598521 - 19598691
Alignment:
| Q |
146 |
aagtgctaggtgcttgtttcttgctgatatcttaaggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttgaaa |
245 |
Q |
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| T |
19598521 |
aagtgcaatgtgtttgtttcttgcagattgcttgaggtgtagtttgacaaaagtgggatgagagattagggttttccatgacttgcagacgcatttgaat |
19598620 |
T |
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| Q |
246 |
cgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgcgcga |
316 |
Q |
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| T |
19598621 |
tgcacaagagaatttacaggaaggaatgataggatttcaacgataagttcatcagggaggaatacgagcga |
19598691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 306
Target Start/End: Original strand, 15572746 - 15572850
Alignment:
| Q |
202 |
gatcagagatgatggttttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagg |
301 |
Q |
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| T |
15572746 |
gatcagagaataaggttttccaggacctgcagacgcacttcatccgcatcagatatttcacttcaaggaacgataggacttccacaataagttcatcagg |
15572845 |
T |
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| Q |
302 |
gagga |
306 |
Q |
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||||| |
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| T |
15572846 |
gagga |
15572850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 304
Target Start/End: Original strand, 19610199 - 19610308
Alignment:
| Q |
195 |
aaagtgggatcagagatgatggttttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagtt |
294 |
Q |
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||||||||||| || |||| | |||||||||||||||||| || || || ||||||||| ||||||||| || ||||| |||||||| |||||| | |
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| T |
19610199 |
aaagtgggatcggatatgagagctttccatgacttgcagacgcacttaaatcgcatcagagatttcaccgggagaaatgacaggacttcggtgattaact |
19610298 |
T |
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| Q |
295 |
catcagggag |
304 |
Q |
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| T |
19610299 |
cattagggag |
19610308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 29598353 - 29598450
Alignment:
| Q |
215 |
ggttttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgc |
312 |
Q |
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| T |
29598353 |
ggttttccatgacttgcacacacaccttagtcgcatcagagattgcacaggaaggaatgaaaggacttctgcgatgagttcatcagggaggaatacgc |
29598450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 7261 - 7213
Alignment:
| Q |
206 |
agagatgatggttttccatgacttgcagacacatttgaaacgcatcaga |
254 |
Q |
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| T |
7261 |
agagattagggttttccatgatttgcagacacatttgaattgcatcaga |
7213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 14559 - 14623
Alignment:
| Q |
180 |
aggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttgaa |
244 |
Q |
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| T |
14559 |
aggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaa |
14623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 23394 - 23458
Alignment:
| Q |
180 |
aggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttgaa |
244 |
Q |
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| T |
23394 |
aggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaa |
23458 |
T |
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