View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17907_low_19 (Length: 312)

Name: NF17907_low_19
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17907_low_19
NF17907_low_19
[»] chr6 (1 HSPs)
chr6 (1-297)||(10977383-10977676)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 10977676 - 10977383
Alignment:
Q  1 ccaaaagtgcaattaagccaaaattctacgtatatgaaagaatttagtataaagtgaaaaataaataaattcctcaaattctcaccggttatgctataga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10977676 ccaaaagtgcaattaagccaaaattctacgtatatgaaagaatttagtataaagtgaaaaataaataaattcctcaaattctcaccggttatgctataga 10977577  T
Q  101 taatgagacagtgattataatgagtatcatttacagcaaatcccaatagttatcgtgctcctgaacttttcaggtaagatagccttttgtcgtgacagta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||    
T  10977576 taatgagacagtgattataatgagtatcatttacagcaaatcccaatagttatcgtgctcctgaacttttcagataagatagccttttgtcgtga---ta 10977480  T
Q  201 gaaaccactttctaagactaacaaaattttaaattttggtaatggaaaggtcatataatttatgaaaataaagcgagtagaaaacaatagttcattc 297  Q
    | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10977479 ggaaccactttctaagactaacagaattttaaattttggtaatggaaaggtcatataatttatgaaaataaagcgagtagaaaacaatagttcattc 10977383  T

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