View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17907_low_2 (Length: 608)
Name: NF17907_low_2
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17907_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 38954612 - 38955018
Alignment:
| Q |
1 |
agtggactccttcaagagcaacgtagcaagaaagaacgtacaaataccatgatagatcatcttctaaacatgcaagaatcacagccagagtactacaccg |
100 |
Q |
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| T |
38954612 |
agtggactccttcaagagcaacgtagcaagaaagaacgtacaaataccatgatagatcatcttctaaacatgcaagaatcacagccagagtactacaccg |
38954711 |
T |
|
| Q |
101 |
atacaatcatcaaaggcctttgtttggtaagtacataa---taattattgtttctattaatcgtacaaattattgttatataaccttagcttaatcttat |
197 |
Q |
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| T |
38954712 |
atacaatcatcaaaggcctttgtttggtaagtacataataataattattgtttctattaatcgtacaaattatagttatataaccttagcttaatcttat |
38954811 |
T |
|
| Q |
198 |
tttacacatttacatatatataactaaatactcttaaggatttaagggatatatattgtcaacgtaataaagttttacatttacatcctatgaaaactac |
297 |
Q |
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| T |
38954812 |
tttacacatttacatatatataactaaatattgttaaggatttaagggatatatattgtcaacgtaataaagttttacatttacatccgatgaaaactac |
38954911 |
T |
|
| Q |
298 |
cattttgtcccatcatacttttgttaaggtactttaaaattagtggtgtatgacatagaaaaagttgatatatatcttattagatattagtgtacaacta |
397 |
Q |
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| T |
38954912 |
cattttgtcacatcatacttttgttaaggtactttaaaattagtggtgtatgacatagaaaaagttgatatatatcctattagatgttagtgtacaacca |
38955011 |
T |
|
| Q |
398 |
ttttaca |
404 |
Q |
| |
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| T |
38955012 |
ttttaca |
38955018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 479 - 593
Target Start/End: Original strand, 38955509 - 38955623
Alignment:
| Q |
479 |
ataggccatgctccttgctggaacggactcatctgccgtaacattagagtggaccatgtcaaatattttgaactatccagaggtattgaaaaaggtaaga |
578 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38955509 |
ataggcaatgctccttgctggaacggactcatctgccgtaacattagagtggaccatgtcaaatattttgaactatccagaggtattgaaaaaggtaaga |
38955608 |
T |
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| Q |
579 |
gatgaagtggatact |
593 |
Q |
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| T |
38955609 |
gatgaagtggatact |
38955623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 38975840 - 38975724
Alignment:
| Q |
4 |
ggactccttcaagagcaacgtagcaagaaagaacgtacaaataccatgatagatcatcttctaaacatgcaagaatcacagccagagtactacaccgata |
103 |
Q |
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|||||| ||||||| ||||| ||||| || | | ||||||||| ||||||||||||||||||| | ||||||||||| || |||||||| || ||| |
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| T |
38975840 |
ggactcattcaagaacaacgcagcaaaaaccagcatacaaatactatgatagatcatcttctaagtttacaagaatcacaacctgagtactatactgatc |
38975741 |
T |
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| Q |
104 |
caatcatcaaaggcctt |
120 |
Q |
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| T |
38975740 |
aaatcatcaaaggcctt |
38975724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 530
Target Start/End: Complemental strand, 38975182 - 38975138
Alignment:
| Q |
486 |
atgctccttgctggaacggactcatctgccgtaacattagagtgg |
530 |
Q |
| |
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||||| ||||||||||| |||||||| || ||||||||||||||| |
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| T |
38975182 |
atgcttcttgctggaacagactcatcagctgtaacattagagtgg |
38975138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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