View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17907_low_23 (Length: 276)
Name: NF17907_low_23
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17907_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 90 - 262
Target Start/End: Original strand, 35198121 - 35198293
Alignment:
| Q |
90 |
agttgctcaaatcttttctttaaaccatatatgagttgattaattatggttaattgaatggnnnnnnnactgtggaataaaatttgcccgtgaagtgatc |
189 |
Q |
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| T |
35198121 |
agttactcaaatcttttctttaaaccatatatgagttgattaattatggttaattgaaagatttttttactgtggaataaaatttgcccgtgaagtgatc |
35198220 |
T |
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| Q |
190 |
attaacgtaccatggcatgtgtttcactctcgtgtggtctaatattgtttttggaatattacaagcattcatc |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35198221 |
attaacgtaccatggcatgtgtttcactctcgtgtggtttaatattgtttttggaatattacaagcattcatc |
35198293 |
T |
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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 35197991 - 35198084
Alignment:
| Q |
1 |
ttatttccctgaatgaaaaccaacccaaactataaatgagtttatttaaaccannnnnnnnccttttaaaataacaaatattagtgattagttg |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| |
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| T |
35197991 |
ttatttccctgaatgaaaaccaacccaaactataaatgagtttatttaaaccatttttttttcttttaaaatgacaaatgttagtgattagttg |
35198084 |
T |
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