View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17907_low_28 (Length: 235)

Name: NF17907_low_28
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17907_low_28
NF17907_low_28
[»] chr5 (3 HSPs)
chr5 (124-221)||(42140893-42140990)
chr5 (1-104)||(42141394-42141488)
chr5 (160-220)||(40887864-40887923)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 42140990 - 42140893
Alignment:
Q  124 tttgactattaaaccttaacttaagaaactagtgcatgttaaacacatttagacgaaggtgtggtttaaattcctaaactctgaatagatgaaaaaat 221  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  42140990 tttgactattaaaccttaacttaagaaagtagtgcatgttaaacacatttagatgaaggtatggtttaaattcctaaactctgaatagatgagaaaat 42140893  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 42141488 - 42141394
Alignment:
Q  1 aatagtcaatcccattttctttttctccgtagcctatgttgactgacttaaccttcatctccaaaattagaccccagtagtaaataccaatagtcatatt 100  Q
    ||||||||| |||||||||||||||||||||||||||||         ||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  42141488 aatagtcaa-cccattttctttttctccgtagcctatgta--------taaccttcatctccaaaattagatcccagtagtaaatactaatagtcatatt 42141398  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 40887923 - 40887864
Alignment:
Q  160 tgttaaacacatttagacgaaggtgtggtttaaattcctaaactctgaatagatgaaaaaa 220  Q
    |||| ||| |||||||| |||||||||||||||||||||||||| |||||||||| |||||    
T  40887923 tgttcaactcatttagatgaaggtgtggtttaaattcctaaact-tgaatagatggaaaaa 40887864  T

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