View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17907_low_3 (Length: 558)

Name: NF17907_low_3
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17907_low_3
NF17907_low_3
[»] chr5 (35 HSPs)
chr5 (12-233)||(22654881-22655104)
chr5 (290-539)||(22655161-22655409)
chr5 (290-387)||(42086334-42086431)
chr5 (303-387)||(9805011-9805095)
chr5 (303-387)||(23383664-23383748)
chr5 (296-387)||(7308373-7308464)
chr5 (290-385)||(40117424-40117519)
chr5 (290-387)||(5731923-5732020)
chr5 (290-387)||(19572731-19572828)
chr5 (291-369)||(3653918-3653996)
chr5 (307-369)||(20255394-20255456)
chr5 (290-387)||(1538438-1538535)
chr5 (290-387)||(8513526-8513623)
chr5 (290-387)||(25417186-25417283)
chr5 (290-366)||(14588620-14588696)
chr5 (290-368)||(14728109-14728187)
chr5 (290-387)||(12705021-12705118)
chr5 (310-387)||(23247374-23247451)
chr5 (310-387)||(35813021-35813098)
chr5 (335-387)||(28857135-28857187)
chr5 (298-369)||(9168264-9168335)
chr5 (310-373)||(15034096-15034159)
chr5 (339-369)||(19839352-19839382)
chr5 (307-369)||(20705588-20705650)
chr5 (303-373)||(42861234-42861304)
chr5 (336-369)||(7336645-7336678)
chr5 (290-387)||(9812879-9812976)
chr5 (306-387)||(20525845-20525926)
chr5 (306-387)||(30995128-30995209)
chr5 (290-387)||(38897722-38897818)
chr5 (290-374)||(13664280-13664364)
chr5 (339-387)||(18136332-18136380)
chr5 (338-366)||(24499010-24499038)
chr5 (303-387)||(41800984-41801068)
chr5 (290-366)||(43399156-43399232)
[»] chr4 (39 HSPs)
chr4 (310-387)||(36145238-36145315)
chr4 (290-387)||(40780864-40780961)
chr4 (290-387)||(42722580-42722677)
chr4 (303-387)||(40272347-40272431)
chr4 (290-387)||(16450311-16450408)
chr4 (290-387)||(47078469-47078566)
chr4 (290-387)||(55921045-55921142)
chr4 (297-387)||(5472858-5472948)
chr4 (290-387)||(36262770-36262865)
chr4 (290-387)||(7246649-7246746)
chr4 (306-387)||(29895798-29895879)
chr4 (320-385)||(55005339-55005404)
chr4 (303-387)||(8889033-8889117)
chr4 (335-387)||(38075444-38075496)
chr4 (303-387)||(52950093-52950177)
chr4 (290-387)||(1940780-1940874)
chr4 (290-369)||(2559336-2559415)
chr4 (303-369)||(53354561-53354627)
chr4 (314-387)||(1446837-1446910)
chr4 (290-387)||(20128320-20128417)
chr4 (320-385)||(35359749-35359814)
chr4 (290-387)||(38166038-38166135)
chr4 (306-387)||(53599071-53599152)
chr4 (303-387)||(3159485-3159569)
chr4 (307-387)||(6779222-6779302)
chr4 (303-387)||(26237438-26237522)
chr4 (336-387)||(10541027-10541078)
chr4 (290-369)||(16645147-16645226)
chr4 (290-369)||(17080072-17080151)
chr4 (336-387)||(24166461-24166512)
chr4 (336-387)||(29588747-29588798)
chr4 (335-389)||(20421782-20421836)
chr4 (290-356)||(21429343-21429409)
chr4 (303-369)||(49260681-49260747)
chr4 (290-387)||(4738629-4738726)
chr4 (314-387)||(8064825-8064898)
chr4 (304-369)||(38168286-38168350)
chr4 (290-386)||(13073550-13073646)
chr4 (306-386)||(20532428-20532508)
[»] chr7 (31 HSPs)
chr7 (292-387)||(36619259-36619354)
chr7 (290-387)||(38578870-38578967)
chr7 (290-387)||(39474949-39475046)
chr7 (290-387)||(43861975-43862072)
chr7 (293-369)||(45697196-45697272)
chr7 (306-387)||(26423306-26423387)
chr7 (303-387)||(13095867-13095951)
chr7 (296-387)||(22973976-22974067)
chr7 (296-387)||(43925521-43925612)
chr7 (303-386)||(47341886-47341969)
chr7 (290-387)||(10047879-10047976)
chr7 (306-387)||(10317765-10317845)
chr7 (290-387)||(18785678-18785775)
chr7 (290-387)||(27028288-27028385)
chr7 (290-387)||(48804692-48804789)
chr7 (303-387)||(17748398-17748482)
chr7 (310-382)||(45960026-45960098)
chr7 (336-387)||(1797469-1797520)
chr7 (290-385)||(27875091-27875186)
chr7 (303-366)||(41267940-41268003)
chr7 (290-369)||(48224734-48224813)
chr7 (290-369)||(48244359-48244438)
chr7 (322-387)||(365149-365214)
chr7 (290-387)||(34659235-34659332)
chr7 (291-386)||(5039422-5039517)
chr7 (291-386)||(23658189-23658284)
chr7 (290-387)||(8734689-8734786)
chr7 (290-387)||(14650326-14650423)
chr7 (290-374)||(23060701-23060783)
chr7 (306-390)||(1605947-1606031)
chr7 (303-355)||(24983435-24983487)
[»] scaffold0291 (1 HSPs)
scaffold0291 (290-387)||(6864-6961)
[»] scaffold0170 (1 HSPs)
scaffold0170 (292-385)||(9856-9949)
[»] chr8 (22 HSPs)
chr8 (290-387)||(45521179-45521275)
chr8 (291-387)||(18374020-18374116)
chr8 (290-385)||(4479299-4479393)
chr8 (296-387)||(6100482-6100573)
chr8 (296-387)||(8141112-8141203)
chr8 (290-387)||(14666074-14666171)
chr8 (303-387)||(10927616-10927700)
chr8 (290-385)||(43032913-43033008)
chr8 (303-387)||(14846586-14846669)
chr8 (310-369)||(583840-583899)
chr8 (290-369)||(3418516-3418595)
chr8 (297-374)||(2209806-2209883)
chr8 (299-387)||(33401811-33401899)
chr8 (293-385)||(34710573-34710665)
chr8 (296-387)||(1012986-1013077)
chr8 (336-387)||(17981451-17981502)
chr8 (306-387)||(9860014-9860095)
chr8 (290-387)||(15884559-15884655)
chr8 (346-387)||(22810090-22810130)
chr8 (297-387)||(25848184-25848276)
chr8 (306-386)||(24837253-24837333)
chr8 (303-387)||(43027315-43027399)
[»] chr6 (22 HSPs)
chr6 (290-387)||(21898658-21898755)
chr6 (303-386)||(11142614-11142697)
chr6 (290-387)||(5253226-5253323)
chr6 (295-373)||(8888906-8888984)
chr6 (290-387)||(8611977-8612074)
chr6 (306-387)||(9179755-9179836)
chr6 (290-387)||(12635824-12635921)
chr6 (290-387)||(29444768-29444865)
chr6 (303-387)||(5029827-5029911)
chr6 (319-387)||(9147311-9147379)
chr6 (297-369)||(10311479-10311551)
chr6 (335-387)||(14107406-14107458)
chr6 (290-385)||(3601096-3601191)
chr6 (290-369)||(9633628-9633707)
chr6 (291-369)||(2271307-2271385)
chr6 (290-388)||(8938720-8938818)
chr6 (290-387)||(6606100-6606197)
chr6 (290-387)||(13036007-13036104)
chr6 (290-387)||(19089508-19089605)
chr6 (290-387)||(34954622-34954719)
chr6 (335-387)||(8932671-8932723)
chr6 (335-387)||(8944137-8944189)
[»] chr1 (34 HSPs)
chr1 (290-387)||(41663860-41663957)
chr1 (290-387)||(49078121-49078218)
chr1 (303-387)||(5855529-5855613)
chr1 (303-387)||(15465972-15466056)
chr1 (290-387)||(26325819-26325916)
chr1 (290-387)||(45361886-45361983)
chr1 (303-387)||(5504038-5504122)
chr1 (303-387)||(17642021-17642105)
chr1 (335-387)||(28324629-28324681)
chr1 (303-387)||(34719783-34719867)
chr1 (290-374)||(16956486-16956570)
chr1 (304-387)||(9659197-9659279)
chr1 (296-387)||(10336523-10336614)
chr1 (336-387)||(50503411-50503462)
chr1 (290-387)||(8763998-8764095)
chr1 (303-387)||(11397906-11397989)
chr1 (291-387)||(30927732-30927828)
chr1 (335-387)||(48798119-48798171)
chr1 (332-387)||(16263552-16263607)
chr1 (296-387)||(17358481-17358572)
chr1 (304-387)||(18915874-18915957)
chr1 (296-387)||(21849215-21849305)
chr1 (296-387)||(32150932-32151023)
chr1 (336-387)||(43959871-43959922)
chr1 (302-387)||(9853293-9853378)
chr1 (308-369)||(10422813-10422874)
chr1 (338-387)||(18649404-18649453)
chr1 (290-387)||(26660145-26660241)
chr1 (336-385)||(33004065-33004114)
chr1 (310-367)||(33498863-33498920)
chr1 (335-383)||(32882-32930)
chr1 (303-387)||(2567283-2567367)
chr1 (307-387)||(31152723-31152803)
chr1 (291-387)||(38859121-38859217)
[»] scaffold0016 (1 HSPs)
scaffold0016 (303-387)||(8717-8801)
[»] chr3 (45 HSPs)
chr3 (303-387)||(50405620-50405704)
chr3 (290-373)||(35998575-35998658)
chr3 (303-373)||(24506665-24506735)
chr3 (290-387)||(30045827-30045924)
chr3 (296-373)||(43330742-43330819)
chr3 (290-387)||(47219150-47219247)
chr3 (290-387)||(54261232-54261329)
chr3 (296-387)||(26043818-26043909)
chr3 (290-387)||(7328850-7328946)
chr3 (290-367)||(23511593-23511670)
chr3 (290-387)||(28572215-28572312)
chr3 (290-387)||(45877460-45877557)
chr3 (290-387)||(51060285-51060382)
chr3 (303-387)||(29127925-29128009)
chr3 (303-387)||(35315962-35316046)
chr3 (290-369)||(3136698-3136777)
chr3 (336-387)||(4638160-4638211)
chr3 (304-387)||(25294966-25295049)
chr3 (303-374)||(34374459-34374530)
chr3 (310-369)||(45450471-45450530)
chr3 (296-387)||(49198357-49198448)
chr3 (336-386)||(15795544-15795593)
chr3 (341-387)||(51683009-51683055)
chr3 (310-355)||(15285757-15285802)
chr3 (304-385)||(29135921-29136002)
chr3 (290-387)||(33251668-33251765)
chr3 (302-386)||(40944890-40944973)
chr3 (290-369)||(3507537-3507616)
chr3 (336-387)||(31072884-31072935)
chr3 (303-354)||(45402368-45402419)
chr3 (291-357)||(40660332-40660398)
chr3 (290-356)||(49021207-49021273)
chr3 (336-386)||(52364850-52364900)
chr3 (290-371)||(2029271-2029352)
chr3 (308-385)||(3755578-3755655)
chr3 (290-387)||(13893932-13894029)
chr3 (290-383)||(29762159-29762252)
chr3 (290-387)||(30767251-30767348)
chr3 (324-373)||(41223076-41223125)
chr3 (314-387)||(42412802-42412875)
chr3 (335-387)||(6462418-6462470)
chr3 (335-387)||(26207850-26207902)
chr3 (339-387)||(26590319-26590367)
chr3 (303-387)||(41630529-41630613)
chr3 (303-387)||(47471838-47471921)
[»] scaffold0002 (2 HSPs)
scaffold0002 (290-387)||(579-676)
scaffold0002 (305-374)||(319444-319513)
[»] chr2 (40 HSPs)
chr2 (310-387)||(15234084-15234161)
chr2 (290-387)||(25540407-25540504)
chr2 (290-387)||(41220641-41220738)
chr2 (336-387)||(21286450-21286501)
chr2 (303-386)||(22593142-22593224)
chr2 (296-385)||(6358160-6358249)
chr2 (290-387)||(12455316-12455413)
chr2 (311-387)||(2528365-2528441)
chr2 (305-369)||(3643905-3643969)
chr2 (303-387)||(10026632-10026716)
chr2 (303-387)||(10046493-10046576)
chr2 (303-387)||(10669598-10669682)
chr2 (290-386)||(16325602-16325698)
chr2 (297-369)||(38962787-38962859)
chr2 (304-387)||(331507-331590)
chr2 (296-387)||(3811700-3811791)
chr2 (290-385)||(12864232-12864327)
chr2 (303-385)||(39201524-39201606)
chr2 (298-387)||(3848925-3849014)
chr2 (290-387)||(7747280-7747377)
chr2 (290-387)||(14169612-14169709)
chr2 (290-387)||(18902533-18902630)
chr2 (306-387)||(38005408-38005489)
chr2 (290-387)||(39806888-39806985)
chr2 (290-387)||(41031909-41032006)
chr2 (298-387)||(45263678-45263767)
chr2 (304-356)||(18649043-18649095)
chr2 (291-387)||(24179575-24179670)
chr2 (290-374)||(34346290-34346374)
chr2 (336-387)||(8410137-8410188)
chr2 (296-387)||(37560179-37560270)
chr2 (335-370)||(41187872-41187907)
chr2 (296-387)||(42770660-42770751)
chr2 (336-387)||(44139490-44139541)
chr2 (311-369)||(10106612-10106670)
chr2 (290-387)||(10823066-10823163)
chr2 (336-385)||(29653635-29653684)
chr2 (290-387)||(34356212-34356309)
chr2 (296-356)||(26805333-26805393)
chr2 (335-387)||(40968963-40969015)
[»] scaffold0223 (1 HSPs)
scaffold0223 (304-387)||(16888-16971)
[»] scaffold0209 (1 HSPs)
scaffold0209 (310-369)||(12600-12659)
[»] scaffold0006 (1 HSPs)
scaffold0006 (290-387)||(68526-68620)
[»] scaffold0005 (1 HSPs)
scaffold0005 (336-387)||(271123-271174)
[»] scaffold0010 (1 HSPs)
scaffold0010 (303-385)||(155727-155809)
[»] scaffold0316 (1 HSPs)
scaffold0316 (290-387)||(1617-1714)
[»] scaffold0009 (1 HSPs)
scaffold0009 (290-387)||(42835-42932)
[»] scaffold0635 (1 HSPs)
scaffold0635 (311-369)||(2114-2172)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 22654881 - 22655104
Alignment:
Q  12 ataattctacaagtggtagtgtgaacatttgacaatgtggtttctgtgataggtcaaaaccacaagttttccctttaaatacctaa--atattagtcatt 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  22654881 ataagtctacaagtggtagtgtgaacatttgacaatgtggtttccgtgataggtcaaaaccacaagttttccctttaaatacctaactatattagtcatt 22654980  T
Q  110 taatgtactgcaaaatgaatacaggttttgaaaagatggagaagaatggtaatcttactagaaggaaaaaaggagggcttgcaacaatgccttttatctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22654981 taatgtactgcaaaatgaatacaggttttgaaaagatggagaagaatggtaatcttactagaaggaaaaaaggagggcttgcaacaatgccttttatctt 22655080  T
Q  210 tggtatgctttgaaaccctaactc 233  Q
    ||||||||||||||||||||||||    
T  22655081 tggtatgctttgaaaccctaactc 22655104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 290 - 539
Target Start/End: Original strand, 22655161 - 22655409
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaaccag 389  Q
    |||||||||||| ||||||| ||||||| ||||||||||  |||||||||||||||||||| |||||||||| | |||||||||| ||||||||||||||    
T  22655161 cgcactggttttcgacccac-aaaggtggacgactaatctgacttatgcgtagaggcatgcacactgatcaaacattgtttcccctgggaatcgaaccag 22655259  T
Q  390 gggttagatagtaaactatagaaatattaatgttgatttaattttctgttgttgcagctaatgaggttactgagaagttagcagtggtgggtttcaatgc 489  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22655260 gggttagatagtaaactaaagaaatattaatgttgatttaattttctgttgttgcagctaatgaggttactgagaagttagcagtggtgggtttcaatgc 22655359  T
Q  490 aaacatgataaactacctaacaacacagcttcacatgccattaacaaaag 539  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22655360 aaacatgataagctacctaacaacacagcttcacatgccattaacaaaag 22655409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 42086431 - 42086334
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||||||||||| ||||||||||   || |||||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  42086431 cgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatcgaacc 42086334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 9805095 - 9805011
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| ||||||||||   || ||||||||||||||||||||||  ||||||||||| |||| ||||||||||||    
T  9805095 gacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacc 9805011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 23383748 - 23383664
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| ||||||||||   || ||||||||||||| ||||||||  ||||||||||| |||| ||||||||||||    
T  23383748 gacccaccaaaggtggacgactaatccagctcatgcgtagaggcaagcgcactggccaagcgttgttccccctgggaatcgaacc 23383664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 7308373 - 7308464
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||| ||| ||||||||| |||||||||   || ||||||||||||||| ||||||  ||||||||||| |||| ||||||||||||    
T  7308373 ggtttttgatccatcaaaggtgagcgactaatccggctcatgcgtagaggcatgtgcactgcccaagcgttgttccccctgggaatcgaacc 7308464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 290 - 385
Target Start/End: Complemental strand, 40117519 - 40117424
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    ||||| |||||| || ||||||||||||||||| |||||   || ||||||||||||||||||||||  ||||||||||| |||| || |||||||    
T  40117519 cgcaccggttttcgatccaccaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatcgaa 40117424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 5731923 - 5732020
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||| ||||||||||||||||||   || || |||||||||||||||||||  ||||||||||| | || ||||||||||||    
T  5731923 cgcaccggtttccgacccactaaaggtgaacgactaatctggctcatacgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacc 5732020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 19572828 - 19572731
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||   ||||||||| |||||||||||||||   || ||||||||||||||||||||||  |||| |||||| |||| ||||||| ||||    
T  19572828 cgcactggtttccaacccaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatctaacc 19572731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 291 - 369
Target Start/End: Original strand, 3653918 - 3653996
Alignment:
Q  291 gcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||| |||||| || |||||||||||| ||||||||||   ||  ||||||||||||||||||||| ||||||||||||    
T  3653918 gcaccggttttcgatccaccaaaggtggacgactaatccgcctcgtgcgtagaggcatgcgcactggtcaagcgttgtt 3653996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 20255456 - 20255394
Alignment:
Q  307 caccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||||||||| ||||||||||  ||| |||||||||||||||||||||| ||||| ||||||    
T  20255456 caccaaaggtggacgactaatccgactcatgcgtagaggcatgcgcactggtcaagtgttgtt 20255394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 1538535 - 1538438
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||| |||| |||| |||||   || ||||||||||||||||||||||  |||| |||||| |||| ||||||||||||    
T  1538535 cgcaccggtttccgacccaccaatggtggacgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 1538438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 8513623 - 8513526
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||||||||||| ||||||||||   ||  |||||||||||||| ||||||  ||||| ||||||||||  |||||||||||    
T  8513623 cgcaccggtttccgacccaccaaaggtggacgactaatctggctcgtgcgtagaggcatgtgcactggccaagcattgtttcccctaggaatcgaacc 8513526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 25417186 - 25417283
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| ||||| ||||||||||| ||| || ||||||||   ||  | |||||||||||||||||||  ||||||||||| |||| ||||||||||||    
T  25417186 cgcaccggtttctgacccaccaatggtaaatgactaatccggctcgttcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacc 25417283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 14588620 - 14588696
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgtt 366  Q
    ||||| |||||| | | ||||||||||| ||||||||||   || |||||||||||||||||||||| |||||||||    
T  14588620 cgcaccggttttcggctcaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgtt 14588696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 14728187 - 14728109
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgt 368  Q
    ||||| |||||  |||||| ||||||||| | |||||||   || ||||||||||||||||||||||| ||||||||||    
T  14728187 cgcaccggtttccgacccatcaaaggtgagcaactaatccggctcatgcgtagaggcatgcgcactgaccaagcgttgt 14728109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 12705118 - 12705021
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| ||||| ||||||||||||||||  |||||||||    | ||||||||| |||||| ||||| |||||||||||| | ||  |||||||||||    
T  12705118 cgcaccggtttctgacccaccaaaggtgggcgactaatccggttcatgcgtagaagcatgcacactggtcaagcgttgttcctcctcggaatcgaacc 12705021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 23247374 - 23247451
Alignment:
Q  310 caaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||| ||||||||||   ||  |||||||||||||||  ||||||||||||||||| | || ||||||||||||    
T  23247374 caaaggtggacgactaatctggctcgtgcgtagaggcatgcatactgatcaagcgttgttcctcctgggaatcgaacc 23247451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 35813021 - 35813098
Alignment:
Q  310 caaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||| ||||||||||  ||| ||| |||||| ||||||||||| |||||| || |||||||  |||||||||||    
T  35813021 caaaggtggacgactaatccgactcatgtgtagagacatgcgcactggtcaagcattatttcccctaggaatcgaacc 35813098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 28857187 - 28857135
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||||||||||  |||| |||||| |||| ||||||||||||    
T  28857187 atgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 28857135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 369
Target Start/End: Original strand, 9168264 - 9168335
Alignment:
Q  298 tttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||| ||||||| ||||||| ||||||||||   || ||||||||||| ||||||||||  |||||||||||    
T  9168264 ttttcgacccactaaaggtggacgactaatccggctcatgcgtagaggtatgcgcactggccaagcgttgtt 9168335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 15034159 - 15034096
Alignment:
Q  310 caaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccc 373  Q
    |||||||| || ||||||||  || |||||||||||||||| |||||| |||| ||||||||||    
T  15034159 caaaggtggacaactaatcaggctcatgcgtagaggcatgcacactgaccaagtgttgtttccc 15034096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 369
Target Start/End: Complemental strand, 19839382 - 19839352
Alignment:
Q  339 gtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||||||||||||||||||||||||||||||    
T  19839382 gtagaggcatgcgcactgatcaagcgttgtt 19839352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 20705650 - 20705588
Alignment:
Q  307 caccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||||| | ||||||| |||||   |||||||||||||||||||||||||| ||| |||||||    
T  20705650 caccaatgatgaacgattaatctgccttatgcgtagaggcatgcgcactgaccaaacgttgtt 20705588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 373
Target Start/End: Original strand, 42861234 - 42861304
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccc 373  Q
    |||||||||| |||| |||| |||||   || ||||||||||||||||||||||  |||| ||||||||||    
T  42861234 gacccaccaatggtggacgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtttccc 42861304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 7336678 - 7336645
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||||||||||||||||||||| ||||||||||    
T  7336678 tgcgtagaggcatgcgcactgataaagcgttgtt 7336645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 9812976 - 9812879
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| ||||| ||||||||||||||||  |||||||||    | ||||||||| |||||| |||||  ||||||||||| | ||  |||||||||||    
T  9812976 cgcaccggtttctgacccaccaaaggtgggcgactaatccggttcatgcgtagaagcatgcacactggccaagcgttgttcctcctcggaatcgaacc 9812879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 20525926 - 20525845
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||| |||| ||||||||||   || ||||||||||||||||||||||   ||| |||||| | || ||||||||||||    
T  20525926 ccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggcgaagtgttgttccacctgggaatcgaacc 20525845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 30995209 - 30995128
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||| ||| |||||||||   ||  ||||||||||||||||| |||  |||| |||||| |||| ||||||||||||    
T  30995209 ccaccaaagatgagcgactaatccggctcgtgcgtagaggcatgcgccctggccaagtgttgttccccctgggaatcgaacc 30995128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 38897722 - 38897818
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||  || ||||||||||||  | |||||||   ||  |||||||||||||||||||||  ||||||||| |||||| || |||||||||    
T  38897722 cgcactggtttccgatccaccaaaggtgggcaactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttg-ttcccctggaaatcgaacc 38897818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 13664364 - 13664280
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttcccc 374  Q
    ||||| |||||  ||| |||||||||||| ||| |||||   || ||||||||||||||||||||||  |||| |||||| ||||    
T  13664364 cgcaccggtttccgacacaccaaaggtgatcgattaatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccc 13664280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 18136332 - 18136380
Alignment:
Q  339 gtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||| |||||| |||| |||||| |||| ||||||||||||    
T  18136332 gtagaggcatgcacactgaccaagtgttgttccccctgggaatcgaacc 18136380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 366
Target Start/End: Complemental strand, 24499038 - 24499010
Alignment:
Q  338 cgtagaggcatgcgcactgatcaagcgtt 366  Q
    |||||||||||||||||||||||||||||    
T  24499038 cgtagaggcatgcgcactgatcaagcgtt 24499010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 41801068 - 41800984
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||||| |||||||||||||   ||  ||||||||| |||||||| || |||||||||||| |||  | ||||||||||    
T  41801068 gacccatcaaagatgaacgactaatccggctcgtgcgtagagacatgcgcattggtcaagcgttgttccccttgagaatcgaacc 41800984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 43399232 - 43399156
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgtt 366  Q
    ||||| |||||  |||| |||||| ||| |||||||||| | ||  |||||||||||||||||||||  ||||||||    
T  43399232 cgcaccggtttccgaccaaccaaatgtggacgactaatcctgctcgtgcgtagaggcatgcgcactggccaagcgtt 43399156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 36145238 - 36145315
Alignment:
Q  310 caaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||| ||||||||||   || ||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36145238 caaaggtggacgactaatccggctcatgtgtagaggcatgcgcactgatcaagcgttgtttcccctgggaatcgaacc 36145315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 40780864 - 40780961
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||||||||||| ||||||||||   || ||||||||||||||||||||||| ||||||||||| |||  | ||||||||||    
T  40780864 cgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagcgttgttccccttgagaatcgaacc 40780961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 42722580 - 42722677
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||| ||||||| ||||||||||||||||||   || ||||||||||||||||||||||  ||||||||||| | || |||||| |||||    
T  42722580 cgcaccggttttcgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaattgaacc 42722677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 40272347 - 40272431
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||| |||||||||| ||||  ||||||||||||||||||||||||||  ||||||||||| |||  || |||||||||    
T  40272347 gacccaccaatggtgaacgacaaatccgacttatgcgtagaggcatgcgcactggccaagcgttgttccccatggaaatcgaacc 40272431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 16450408 - 16450311
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||| |||||||||| ||||||||||   || ||||||||||||||| ||||||  ||||||||||| |||| ||||||||||||    
T  16450408 cgcaccggtttccgacctaccaaaggtggacgactaatctggctcatgcgtagaggcatgtgcactggccaagcgttgttccccctgggaatcgaacc 16450311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 47078566 - 47078469
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||  |||||||||| ||||| |||||||||   ||  |||||||||||||| ||||||  ||||||||||| |||| ||||||||||||    
T  47078566 cgcactggtttccgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgtgcactggccaagcgttgttccccctgggaatcgaacc 47078469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 55921142 - 55921045
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||| ||| |||||   || || |||||||||||||||||||| |||| |||||| |||| ||||||||||||    
T  55921142 cgcaccggtttccgacccaccaaaggtgagcgattaatccggctcatacgtagaggcatgcgcactgaccaagtgttgttccccctgggaatcgaacc 55921045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 297 - 387
Target Start/End: Original strand, 5472858 - 5472948
Alignment:
Q  297 gtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||||||||||||  |||||||||   ||  |||||||||||||||||||||  |||||||||||||||| | ||||| ||||    
T  5472858 gttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatcaaacc 5472948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 36262770 - 36262865
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| |||||| ||||||||||||||||  |||||||||  |||  |||||||||||||| ||||||  |||||||||||  ||| ||||||||||||    
T  36262770 cgcattggtttctgacccaccaaaggtgggcgactaatccgactcgtgcgtagaggcatgtgcactggccaagcgttgtt--ccctgggaatcgaacc 36262865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 7246649 - 7246746
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||  |||||||||   || ||||||||||||||||||||||  ||||||||||| || |  |||||||||||    
T  7246649 cgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcccactaggaatcgaacc 7246746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 29895879 - 29895798
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||| |||| ||||||||||   || ||||||||||||||||||||||  |||| |||||| |||| ||||||||||||    
T  29895879 ccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 29895798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 55005339 - 55005404
Alignment:
Q  320 cgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    |||||||||  |||| |||||||||||||||||| || ||||||||||||||||| | ||||||||    
T  55005339 cgactaatccgacttgtgcgtagaggcatgcgcaatggtcaagcgttgtttcccctgcgaatcgaa 55005404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 8889117 - 8889033
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| ||||||||||   || |||||||||| |||||||||||  |||| |||||| ||||  |||||||||||    
T  8889117 gacccaccaaaggtggacgactaatccggctcatgcgtagagccatgcgcactgcccaagtgttgttccccctaggaatcgaacc 8889033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 38075496 - 38075444
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||||||||||  |||||||||||||||| | ||||||||||    
T  38075496 atgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatcgaacc 38075444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 52950177 - 52950093
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| ||||||||||    | ||| |||||| |||||||||||  ||||||||||| |||| ||||||||||||    
T  52950177 gacccaccaaaggtggacgactaatctggttcatgtgtagagtcatgcgcactggccaagcgttgttccccctgggaatcgaacc 52950093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 1940780 - 1940874
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||| |||||||||||||||  |||||||||   ||  |||||||||||||||||||    ||||||||||| |||| ||||||||||||    
T  1940780 cgcaccggttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac---ccaagcgttgttccccctgggaatcgaacc 1940874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 369
Target Start/End: Complemental strand, 2559415 - 2559336
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||| |||||  ||||||||||||||| |||| |||||   ||| |||||||||||||||||||||  |||||||||||    
T  2559415 cgcaccggtttccgacccaccaaaggtggacgagtaatccggcttgtgcgtagaggcatgcgcactggccaagcgttgtt 2559336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 53354627 - 53354561
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||||| ||||| |||||||||||||  | |||||||||||||||||||||||| | ||| ||||||    
T  53354627 gacccatcaaagatgaacgactaatccgatttatgcgtagaggcatgcgcactggttaagtgttgtt 53354561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 1446910 - 1446837
Alignment:
Q  314 ggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| ||||||||||   || ||||||||||||||||||||||  |||| |||||| |||| ||||||||||||    
T  1446910 ggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 1446837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 20128417 - 20128320
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| ||||| ||||||||||| |||| ||||||||||   ||  |||||| ||||||||||||||  ||||| ||||| |||| | ||||||||||    
T  20128417 cgcaccggtttctgacccaccaatggtggacgactaatctagctcgtgcgtaaaggcatgcgcactggccaagcattgttccccctgagaatcgaacc 20128320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 385
Target Start/End: Complemental strand, 35359814 - 35359749
Alignment:
Q  320 cgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    |||||||||  |||||||||| ||||||||||||||| |||| ||||||| |||| | ||||||||    
T  35359814 cgactaatccaacttatgcgttgaggcatgcgcactggtcaaacgttgttccccctgagaatcgaa 35359749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 38166135 - 38166038
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||  |||||||||   ||  ||||||||| |||||||||||  ||||||||||| |||| ||||||| ||||    
T  38166135 cgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactggccaagcgttgttccccctgggaatccaacc 38166038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 53599152 - 53599071
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| |||||||||||| |||||   || ||||||||||||||||||||||  ||| ||||||| | || ||||||||||||    
T  53599152 ccactaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttcctcctgggaatcgaacc 53599071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 3159485 - 3159569
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||| ||||| |||||||||   ||  |||||||||||||||||||||  ||||||||||| |||| || | |||||||    
T  3159485 gacccaccaatggtgagcgactaatctggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaagtcgaacc 3159569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 387
Target Start/End: Complemental strand, 6779302 - 6779222
Alignment:
Q  307 caccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||| ||||||||||   || |||| |||||||||||||||||  || | |||||| |||| ||||||||||||    
T  6779302 caccaaaggtggacgactaatccggctcatgcatagaggcatgcgcactggccaggtgttgttccccctgggaatcgaacc 6779222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 26237438 - 26237522
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||| |||| || |||||||  ||| ||||||| || ||| |||||||||||| |||||||||||| | ||||||||||    
T  26237438 gacccatcaatggtggactactaatccgactcatgcgtaaagacatacgcactgatcaaacgttgtttcccctgagaatcgaacc 26237522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 10541078 - 10541027
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| |||||  |||||||||||||||| || |||||||||    
T  10541078 tgcgtagaggcatgcacactggccaagcgttgtttcccctggaaatcgaacc 10541027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 369
Target Start/End: Complemental strand, 16645226 - 16645147
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||| |||||  ||||||||| |||||  |||||||||| ||| ||| |||||||||||| |||||  |||||||||||    
T  16645226 cgcaccggtttccgacccaccacaggtgggcgactaatcagactcatgtgtagaggcatgcacactggccaagcgttgtt 16645147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 369
Target Start/End: Complemental strand, 17080151 - 17080072
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||| |||||| || ||| ||||||||  |||||||||   || ||||||||||||||||||||||  |||||||||||    
T  17080151 cgcaccggttttcgatccatcaaaggtgtgcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 17080072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 24166512 - 24166461
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||||||||  ||| |||||||||||  ||||||||||||    
T  24166512 tgcgtagaggcatgcgcactggccaaacgttgtttcccttgggaatcgaacc 24166461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 29588798 - 29588747
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||||||||   ||||| |||||||||| ||||||||||||    
T  29588798 tgcgtagaggcatgcgcactagccaagctttgtttcccctgggaatcgaacc 29588747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 20421836 - 20421782
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaaccag 389  Q
    ||||||||||||||||||||||  |||| |||||| |||| || |||||||||||    
T  20421836 atgcgtagaggcatgcgcactggccaagtgttgttccccctggaaatcgaaccag 20421782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 21429409 - 21429343
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactg 356  Q
    ||||| |||||  ||||||||||||||| ||||||| ||  |||  |||||||||||||||||||||    
T  21429409 cgcaccggtttccgacccaccaaaggtggacgactagtctgactcgtgcgtagaggcatgcgcactg 21429343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 49260681 - 49260747
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||||||||||||||  |||||||||   ||  |||||||||||||||||||||  |||||||||||    
T  49260681 gacccaccaaaggtggtcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 49260747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 4738726 - 4738629
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||||||||||| |||||||||    || |||||||||| |||||||||||   |||||||||| | || || |||||||||    
T  4738726 cgcaccggtttccgacccaccaaaggtggacgactaattcagctcatgcgtagagacatgcgcactggcaaagcgttgttcctcctggaaatcgaacc 4738629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 8064825 - 8064898
Alignment:
Q  314 ggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| ||||||||||   || |||||||||||||||||||||| ||||| ||| || |||  ||||||||||||    
T  8064825 ggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagtgttattccccttgggaatcgaacc 8064898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 38168350 - 38168286
Alignment:
Q  304 acccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||||| ||||||||||||||||||   || ||||||||||||||| ||||||  |||||||||||    
T  38168350 acccactaaaggtgaacgactaatccggctcatgcgtagaggcatg-gcactggccaagcgttgtt 38168286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 386
Target Start/End: Complemental strand, 13073646 - 13073550
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    ||||| |||||  |||||||||||||| |||||||||||    | ||||||||||| ||||||||||  ||| | ||||| |||  |||||||||||    
T  13073646 cgcaccggtttccgacccaccaaaggtaaacgactaatctggttcatgcgtagaggtatgcgcactggccaaacattgttccccatgggaatcgaac 13073550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 386
Target Start/End: Original strand, 20532428 - 20532508
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    ||||||||||||  ||||| |||   || ||||||||||||||||||||||  ||||||||||| | || || ||||||||    
T  20532428 ccaccaaaggtgggcgacttatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctggaaatcgaac 20532508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 36619259 - 36619354
Alignment:
Q  292 cactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||||||||| |||| ||||||||||   || |||||||||||||||| |||||  |||| |||||| |||| ||||||||||||    
T  36619259 cactggtttttgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcacactggacaagtgttgttccccctgggaatcgaacc 36619354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 38578870 - 38578967
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||  |||||||||   || ||||||||||||||||||||||  ||||||||||| |||| ||||||||||||    
T  38578870 cgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacc 38578967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 39475046 - 39474949
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||| ||||||| ||||||| ||||||||||   || ||||||||||| ||||||||||| ||||||||||| |||   |||||||||||    
T  39475046 cgcactggttttcgacccactaaaggtggacgactaatccggctcatgcgtagaggtatgcgcactgaccaagcgttgttccccataggaatcgaacc 39474949  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 43861975 - 43862072
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||| || |||||||||||||| ||||||||   || ||||||||||||||||||||||  ||| ||||||| |||| ||||||||||||    
T  43861975 cgcaccggttttcgatccaccaaaggtgaatgactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttccccctgggaatcgaacc 43862072  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 45697196 - 45697272
Alignment:
Q  293 actggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||||||  ||||||||||||||| |||||||| |  ||| |||||||||||||||||||||||||||| ||||||    
T  45697196 actggtttccgacccaccaaaggtggacgactaacccaactcatgcgtagaggcatgcgcactgatcaagtgttgtt 45697272  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 26423306 - 26423387
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||||||||||   ||  |||||||||||| | ||||||  |||||||||||||||| ||||||||||||    
T  26423306 ccaccaaaggtgaacgactaatctggctcgtgcgtagaggcaggtgcactggccaagcgttgtttcccctgggaatcgaacc 26423387  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 13095951 - 13095867
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||| |||||||||   || ||||||||||||||||||||||  |||| |||||| |||| |||||| |||||    
T  13095951 gacccaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatagaacc 13095867  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 22974067 - 22973976
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||||||||||||| ||||||||||   || ||||||||| |||||| |||||  ||||||||||| |||| | ||||||||||    
T  22974067 ggtttctgacccaccaaaggtggacgactaatctggctcatgcgtagacgcatgcacactggccaagcgttgttccccctgagaatcgaacc 22973976  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 43925612 - 43925521
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| ||| ||| ||||||| ||| |||||||   || ||||||||||||||||||||||| |||| |||||| |||| ||||||||||||    
T  43925612 ggtttctgatccatcaaaggtaaacaactaatccagctcatgcgtagaggcatgcgcactgaccaagtgttgttccccctgggaatcgaacc 43925521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 47341969 - 47341886
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    |||||||||| |||||||||| |||| | ||  |||||||||||||||||||||  |||| |||||| |||| |||||||||||    
T  47341969 gacccaccaatggtgaacgaccaatcctgctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaac 47341886  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 10047879 - 10047976
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||| |||| |||||||||  | || |||||||||||| |||||||||  |||| |||||| |||| ||||||||||||    
T  10047879 cgcaccggtttccgacccaccaatggtggacgactaattctgctcatgcgtagaggcctgcgcactggccaagtgttgttccccctgggaatcgaacc 10047976  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 10317765 - 10317845
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||| ||||||||| | ||||||| ||||||||| |||||||| |||| ||| || |||| ||||||||||||    
T  10317765 ccaccaaaggtgagcgactaatc-tgcttatgcatagaggcatacgcactgaccaagtgttattccccctgggaatcgaacc 10317845  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 18785775 - 18785678
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||||| ||||||||||||||||    | ||||||||||||||||||||||  |||| |||||| ||||  |||||||||||    
T  18785775 cgcaccggtttccgacccaccagaggtgaacgactaatccagttcatgcgtagaggcatgcgcactggccaagtgttgttccccctaggaatcgaacc 18785678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 27028385 - 27028288
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||| |||||||||   || ||| ||||||||||||||||||  |||| |||||| |||| || |||||||||    
T  27028385 cgcaccggtttccgacccaccaaaggtgagcgactaatccagctcatgtgtagaggcatgcgcactggccaagtgttgttccccctggaaatcgaacc 27028288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 48804789 - 48804692
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||| |||| ||||||||||   || ||||||||||||||||||||||  |||| |||||| |||  ||||||||||||    
T  48804789 cgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccttgggaatcgaacc 48804692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 17748398 - 17748482
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| |||||||| ||||||||||   ||  | |||||||||||||||||||  ||||||||||| |||| ||||||||||||    
T  17748398 gacccaacaaaggtggacgactaatccggctcgtacgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacc 17748482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 45960026 - 45960098
Alignment:
Q  310 caaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatc 382  Q
    ||||||||| |||||||||   |||||||||||||||||||||||||| |||| |||||| |||  |||||||    
T  45960026 caaaggtgagcgactaatccggcttatgcgtagaggcatgcgcactgaccaagtgttgttgcccttgggaatc 45960098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 1797520 - 1797469
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||| |||||||||||  |||||||||||||||| ||||||||||||    
T  1797520 tgcgtagagacatgcgcactggccaagcgttgtttcccctgggaatcgaacc 1797469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 385
Target Start/End: Original strand, 27875091 - 27875186
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    ||||| |||||| ||||||| ||||||| |||||||||   ||| ||||||||||||||| ||||||  |||| ||| || |||| ||||||||||    
T  27875091 cgcaccggttttcgacccactaaaggtggacgactaatgcgactcatgcgtagaggcatgtgcactggccaagtgttattccccctgggaatcgaa 27875186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 41267940 - 41268003
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgtt 366  Q
    |||||| |||||||| ||||||||||  ||| |||||||||||||||| |||| ||||||||||    
T  41267940 gacccatcaaaggtggacgactaatctaactcatgcgtagaggcatgcacactaatcaagcgtt 41268003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 48224734 - 48224813
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||| ||||||| |||||||||||| |||| |||||||   ||| || ||||||  ||||||||||||||||||||||||    
T  48224734 cgcattggttttcgacccaccaaagatgaaggactaatttgactcatacgtagatacatgcgcactgatcaagcgttgtt 48224813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 48244359 - 48244438
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||| |||||| || ||||||||||||| |||||||||   || |||||||||||||  |||||||||||||| |||||    
T  48244359 cgcaccggttttcgatccaccaaaggtgagcgactaatccggctcatgcgtagaggcaaacgcactgatcaagcattgtt 48244438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 365214 - 365149
Alignment:
Q  322 actaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||  || |||||||||||||||||||||||| |||||||||| | || | ||||||||||    
T  365214 actaatcaggctcatgcgtagaggcatgcgcactgattaagcgttgttcctcctgtgaatcgaacc 365149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 34659332 - 34659235
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||| ||| |||||| ||||  |||||||||   ||  ||||||||||||||||||||| |||||||||||| |||  | ||||||||||    
T  34659332 cgcaccggttttcgacacaccaatggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagcgttgttccccttgagaatcgaacc 34659235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 386
Target Start/End: Original strand, 5039422 - 5039517
Alignment:
Q  291 gcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    |||| |||||| || ||||||||||||| |||||||||   || ||||||||||| ||| ||||||| |||| |||||| | ||  ||||||||||    
T  5039422 gcaccggttttcgatccaccaaaggtgagcgactaatccggctcatgcgtagaggtatgtgcactgaccaagtgttgttcctcctaggaatcgaac 5039517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 386
Target Start/End: Complemental strand, 23658284 - 23658189
Alignment:
Q  291 gcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    |||| ||||| ||||||||||||| || ||||||||||   ||  || |||||||||||| |||||  ||||||||||| |||| || ||||||||    
T  23658284 gcacaggtttctgacccaccaaagatggacgactaatccggctcgtgtgtagaggcatgcacactggccaagcgttgttccccctggaaatcgaac 23658189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 8734689 - 8734786
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||  |||||||||   ||  ||||| |||||||||||||||  ||||| ||||| ||||| | |||||||||    
T  8734689 cgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgttgaggcatgcgcactgcccaagcattgttcccccaagaaatcgaacc 8734786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 14650423 - 14650326
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| ||||||  ||||||||||||||| ||||||| |   || ||||||||||||||  |||||| |||||| ||||| | || || |||||||||    
T  14650423 cgcaccggttttcaacccaccaaaggtgagcgactaacccggctcatgcgtagaggcatatgcactggtcaagcattgttcctcctggaaatcgaacc 14650326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 23060783 - 23060701
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttcccc 374  Q
    ||||| ||||||| | |||||||||||||||||||||||  ||| ||||||  |||||||| || || |||| ||||||| ||||    
T  23060783 cgcaccggttttttatccaccaaaggtgaacgactaatccgactcatgcgt--aggcatgcacattggtcaaacgttgttccccc 23060701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 390
Target Start/End: Complemental strand, 1606031 - 1605947
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaaccagg 390  Q
    ||||||||||||  |||||||||   || | || |||||||||| ||||||  ||||||||||| |||| || ||||||||||||    
T  1606031 ccaccaaaggtgggcgactaatccggctcaagcctagaggcatgtgcactggccaagcgttgttccccctggaaatcgaaccagg 1605947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 24983435 - 24983487
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcact 355  Q
    |||||||||| |||| ||||||||||   || |||||||||||||||||||||    
T  24983435 gacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcact 24983487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 6961 - 6864
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||| |||||||||   || ||||||||||||||||||||||  |||| |||||| |||| ||||||||||||    
T  6961 cgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 6864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 292 - 385
Target Start/End: Complemental strand, 9949 - 9856
Alignment:
Q  292 cactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    ||||||||| |||||||||||||||| ||||||||||   ||  |||||||||||||||||||||  ||||||||||| |||| || |||||||    
T  9949 cactggtttctgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatcgaa 9856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 45521275 - 45521179
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||| ||||||||| |||||||||   || |||||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  45521275 cgcaccggtttccgacccatcaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactgatcaagtgttg-ttcccctgggaatcgaacc 45521179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 387
Target Start/End: Complemental strand, 18374116 - 18374020
Alignment:
Q  291 gcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| |||||| |||||||||||| || ||||||||||   || |||||||||||||||||||||| ||||||||||||  ||| | ||||||||||    
T  18374116 gcaccggttttcgacccaccaaagttggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttctccctgagaatcgaacc 18374020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 290 - 385
Target Start/End: Original strand, 4479299 - 4479393
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    ||||| |||||  ||||||||||||||| ||||||||||   || ||||||||||||||||||||||  ||||||||| |||||| ||||||||||    
T  4479299 cgcaccggtttccgacccaccaaaggtggacgactaatccagctcatgcgtagaggcatgcgcactggccaagcgttg-ttcccctgggaatcgaa 4479393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 6100573 - 6100482
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||||||| ||||||||||||||||||   || |||||||| |||||||||||||  ||||||||||| | || ||||||||||||    
T  6100573 ggttttcgacccactaaaggtgaacgactaatccggctcatgcgtagtggcatgcgcactggccaagcgttgttcctcctgggaatcgaacc 6100482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 8141203 - 8141112
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||||||||| ||| |||||||||    || ||||||||||||||||||||||  |||||||||||||||| || |||||||||    
T  8141203 ggtttctgacccaccaaatgtggacgactaattcagctcatgcgtagaggcatgcgcactggccaagcgttgtttcccctggaaatcgaacc 8141112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 14666074 - 14666171
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||| ||||||||||  |||  |||||||||   ||| |||||||||||||||||||||  |||| ||||||||||| ||||||||||||    
T  14666074 cgcaccggttttcgacccaccaactgtgggcgactaatctggcttgtgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatcgaacc 14666171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 10927700 - 10927616
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||| ||||||||||||||||||   || ||||||||||||||||||||||  ||||||||||| | ||  |||||||||||    
T  10927700 gacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctaggaatcgaacc 10927616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 385
Target Start/End: Complemental strand, 43033008 - 43032913
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    ||||| ||||| ||||||||||||||||  |||||||||   ||  || ||||||||||||||||||  ||||||||||| |||| ||||||||||    
T  43033008 cgcaccggtttctgacccaccaaaggtgggcgactaatccggctcgtgtgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaa 43032913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 14846669 - 14846586
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| |||||| |||  ||| ||||||||||||||||||||||| ||| | ||| |||||| | ||||||||||    
T  14846669 gacccaccaaaggtggacgacttatctgactcatgcgtagaggcatgcgcactgaccaatcattg-ttcccctgagaatcgaacc 14846586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 369
Target Start/End: Complemental strand, 583899 - 583840
Alignment:
Q  310 caaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||||||  |||||||||  ||| |||||||||||||||||||||| ||||||||||||    
T  583899 caaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 583840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 3418516 - 3418595
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||| ||||| |||||||| ||||||| ||||||||||  ||| ||||||||| ||||||||||||  |||| ||||||    
T  3418516 cgcaccggtttctgacccactaaaggtggacgactaatctgactcatgcgtagacgcatgcgcactggccaagtgttgtt 3418595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 2209883 - 2209806
Alignment:
Q  297 gtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttcccc 374  Q
    |||| ||||| ||||| ||||| |||||||||  |||||||||||| | |||||||||||| |||  |||||||||||    
T  2209883 gtttctgacctaccaatggtgagcgactaatccaacttatgcgtagggacatgcgcactgaccaaatgttgtttcccc 2209806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 33401811 - 33401899
Alignment:
Q  299 ttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| |||| |||||||  |||||||||  ||| |||||||||||||||| ||||| ||||| |||||| |||| |  |||||||||    
T  33401811 ttttgatccactaaaggtgggcgactaatccgactcatgcgtagaggcatgcacactggtcaagtgttgttccccctgaaaatcgaacc 33401899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 34710573 - 34710665
Alignment:
Q  293 actggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    ||||||||| |||||||||| | || ||||||| ||  |||| || ||| |||||||||||||   |||| ||||||||||| ||||||||||    
T  34710573 actggttttcgacccaccaatgatggacgactagtccgacttgtgtgtaaaggcatgcgcactagccaagtgttgtttcccctgggaatcgaa 34710665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 1012986 - 1013077
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| || |||| |||||||||||| ||||    || ||||||||||||||| | ||||  ||||||||||| |||| ||||||||||||    
T  1012986 ggttttcgatccactaaaggtgaacgattaattcggctcatgcgtagaggcatgtgtactggccaagcgttgttccccctgggaatcgaacc 1013077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 17981502 - 17981451
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| ||||| ||||| |||||| |||| ||||||||||||    
T  17981502 tgcgtagaggcatgcacactggtcaagagttgttccccctgggaatcgaacc 17981451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 9860014 - 9860095
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||| |||| ||||||||||   || ||| |||||||||||| |||||  |||| |||||| |||| ||||||||||||    
T  9860014 ccaccaatggtggacgactaatctggctcatgtgtagaggcatgcacactggccaagtgttgttccccctgggaatcgaacc 9860095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 15884559 - 15884655
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||  |||||||||   ||  ||||||||||||||||||||   |||| |||| |||||| ||||||||||||    
T  15884559 cgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcacttgccaagtgttg-ttcccctgggaatcgaacc 15884655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 387
Target Start/End: Complemental strand, 22810130 - 22810090
Alignment:
Q  346 catgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  22810130 catgcgcactgaccaagcgttg-ttccccagggaatcgaacc 22810090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 387
Target Start/End: Complemental strand, 25848276 - 25848184
Alignment:
Q  297 gtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgt--tgtttccccagggaatcgaacc 387  Q
    ||||| |||||| |||||||| ||||||| ||  ||| |||||||||| |||| ||||||| |||| ||  |||||| || ||||||||||||    
T  25848276 gttttcgacccagcaaaggtggacgactagtccgactcatgcgtagagacatgtgcactgaccaagtgtgttgtttctcctgggaatcgaacc 25848184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 386
Target Start/End: Complemental strand, 24837333 - 24837253
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    |||||||||||| |||||||||| | ||  ||| ||||||||||  |||||  |||||||||||  ||| |||||||||||    
T  24837333 ccaccaaaggtggacgactaatcctgctcgtgcttagaggcatgaacactggccaagcgttgttctccctgggaatcgaac 24837253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 43027399 - 43027315
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||||| || ||||||||||   || ||||||||||||||||||| ||  ||| ||||||| | || ||||||||||||    
T  43027399 gacccatcaaagatggacgactaatccggctcatgcgtagaggcatgcgcattggacaatcgttgttcctcctgggaatcgaacc 43027315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 21898755 - 21898658
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||| ||||||||||||||||||   || ||||||||||||||||||||||  ||||||||||| | || ||||||||||||    
T  21898755 cgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacc 21898658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 11142697 - 11142614
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    |||||||||||| || || |||||||  ||| |||||||||||||||||||||| |||| |||||||||| | | |||||||||    
T  11142697 gacccaccaaagttggacaactaatctgactcatgcgtagaggcatgcgcactggtcaaacgttgtttccactgcgaatcgaac 11142614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 5253226 - 5253323
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||  ||| |||||   || ||||||||||||||||||||||  |||| |||||| |||| ||||||||||||    
T  5253226 cgcaccggtttccgacccaccaaaggtgggcgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 5253323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 8888984 - 8888906
Alignment:
Q  295 tggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccc 373  Q
    ||||||| || ||| |||||||| ||||||||||  ||| ||||||||||| ||||||||||  ||| |||||||||||    
T  8888984 tggttttcgatccatcaaaggtggacgactaatccgactcatgcgtagaggtatgcgcactggccaaacgttgtttccc 8888906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 8611977 - 8612074
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| ||||| ||||||||||||||||  |||||||||    | ||||||||| |||||| ||||| |||||||||||| | ||  |||||||||||    
T  8611977 cgcaccggtttctgacccaccaaaggtgggcgactaatccggttcatgcgtagaagcatgcacactggtcaagcgttgttcctcctcggaatcgaacc 8612074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 9179755 - 9179836
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||| ||||||||||   || ||||||||||| ||||  |||| ||||| |||||| |||| ||||||||||||    
T  9179755 ccaccaaaggtggacgactaatccagctcatgcgtagaggtatgcatactggtcaagtgttgttccccctgggaatcgaacc 9179836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 12635921 - 12635824
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||||||  |||  |||||||||   ||| ||||||||||||||||||||   |||||||||||||||| ||||||| ||||    
T  12635921 cgcaccggtttccgacccaccaatagtgggcgactaatccggcttgtgcgtagaggcatgcgcactagccaagcgttgtttcccctgggaatcaaacc 12635824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 29444768 - 29444865
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||||  |||||||||||| || || |||||||   || ||||||||||||||||||||||  ||||||||||| ||||  | |||||||||    
T  29444768 cgcactagtttccgacccaccaaagatggacaactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctagaaatcgaacc 29444865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 5029911 - 5029827
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||||| ||  |||||||||  ||| ||||||||||||||||||||||| ||| |||||||  ||| | ||||||||||    
T  5029911 gacccatcaaagatgggcgactaatccaactcatgcgtagaggcatgcgcactgaccaaacgttgttctccctgagaatcgaacc 5029827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 9147379 - 9147311
Alignment:
Q  319 acgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||   |||||||||||||||||| |||||| ||||| || ||| |||| ||||||||||||    
T  9147379 acgactaatccggcttatgcgtagaggcatgtgcactggtcaagtgtcgttccccctgggaatcgaacc 9147311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 10311479 - 10311551
Alignment:
Q  297 gtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||| |||||||||| ||||| |||||||||  |||  ||||||||| |||||||||||  |||||||||||    
T  10311479 gttttcgacccaccaatggtgagcgactaatctaactcgtgcgtagagacatgcgcactggccaagcgttgtt 10311551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 14107406 - 14107458
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| |||||| |||||||||||| | || ||||||||||||    
T  14107406 atgcgtagaggcatgtgcactggtcaagcgttgttcctcctgggaatcgaacc 14107458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 385
Target Start/End: Complemental strand, 3601191 - 3601096
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    ||||| |||||  ||||||||||||||| ||||||||||   ||  || ||| ||||||||||||||  ||||||||||| |||| | ||||||||    
T  3601191 cgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgtgtataggcatgcgcactggccaagcgttgttccccctgagaatcgaa 3601096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 9633628 - 9633707
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||| |||||  |||||||||||||||  |||||||||   ||  |||||||||||||||||||||  |||||||||||    
T  9633628 cgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 9633707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 369
Target Start/End: Original strand, 2271307 - 2271385
Alignment:
Q  291 gcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||||||||| ||||||| |||||||| ||||||||||   ||  ||||||||| |||||||||||   ||||||||||    
T  2271307 gcactggtttctgacccatcaaaggtggacgactaatccggctcgtgcgtagagacatgcgcactggctaagcgttgtt 2271385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 388
Target Start/End: Complemental strand, 8938818 - 8938720
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacca 388  Q
    ||||| |||||  |||||| |||||||| |||||||||    || ||||||||| || ||||||||| ||||| |||||| | || |||||||||||||    
T  8938818 cgcaccggtttccgacccatcaaaggtggacgactaattcggctcatgcgtagatgcttgcgcactggtcaagtgttgttcctcctgggaatcgaacca 8938720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 6606100 - 6606197
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||| |||| ||||||||||   || |||||||||||||||  |||||  |||| |||||| |||| | ||||||||||    
T  6606100 cgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgtacactggccaagtgttgttccccctgagaatcgaacc 6606197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 13036007 - 13036104
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||||||  ||| ||||||||||   || ||||||||||||||||||||||  |||| |||||| |||| |  |||||||||    
T  13036007 cgcaccggtttccgacccaccaatagtggacgactaatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgaaaatcgaacc 13036104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 19089605 - 19089508
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||||||||||  ||||||||||   ||  ||||||||||||||| |||||  |||| |||||| |||| ||||||| ||||    
T  19089605 cgcaccggtttccgacccaccaaaggtagacgactaatccggctcgtgcgtagaggcatgctcactggccaagtgttgttccccctgggaatcaaacc 19089508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 34954622 - 34954719
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| ||||||  |||||| |||||||| ||||||||||   || ||||||||||| ||| ||||||  ||| ||||||| |||| | ||||||||||    
T  34954622 cgcattggtttccgacccatcaaaggtggacgactaatctggctcatgcgtagaggtatgtgcactggccaaacgttgttccccctgagaatcgaacc 34954719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 8932723 - 8932671
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||||||||   |||| |||||| |||| ||||||||||||    
T  8932723 atgcgtagaggcatgcgcactagccaagtgttgttccccctgggaatcgaacc 8932671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 8944189 - 8944137
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||||||||   |||| |||||| |||| ||||||||||||    
T  8944189 atgcgtagaggcatgcgcactagccaagtgttgttccccctgggaatcgaacc 8944137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 41663860 - 41663957
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||| |||| ||||||||||   || ||||||||||||||||||||||| |||| |||||| |||| ||||||||||||    
T  41663860 cgcaccggtttccgacccaccaatggtggacgactaatccagctcatgcgtagaggcatgcgcactgaccaagtgttgttccccctgggaatcgaacc 41663957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 49078218 - 49078121
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||| ||||| |||||||||||||||   || ||||||||||||||||||||||  |||| ||||||||||| ||||||||||||    
T  49078218 cgcaccggtttccgacctaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatcgaacc 49078121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 5855613 - 5855529
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||| ||||||||||||||||||   || ||||||||||||||||||||||  ||||||||||| | || ||||||||||||    
T  5855613 gacccactaaaggtgaacgactaatccgcctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacc 5855529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 15466056 - 15465972
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||| |||| ||||| |||  |||||||||||||| ||||||| ||||||||||| |||| || |||||||||    
T  15466056 gacccaccaaaggtgagcgaccaatcagactcgtgcgtagaggcatgtgcactgaccaagcgttgttccccctggaaatcgaacc 15465972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 26325916 - 26325819
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||| |||| ||||||||||   || ||||||||||||||||||||||| |||| |||||| || | ||||||||||||    
T  26325916 cgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagtgttgttcccgctgggaatcgaacc 26325819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 45361886 - 45361983
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||| ||||||||||||||||||   ||||||||||| |||||||||||||  ||||||||||| | || | ||||||||||    
T  45361886 cgcaccggtttccgacccactaaaggtgaacgactaatccggcttatgcgtagtggcatgcgcactggccaagcgttgttcctcctgagaatcgaacc 45361983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 5504122 - 5504038
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| |||||||| ||||||||||   || ||||||||||||||| ||||| |||||||||||||| ||| | ||||||||||    
T  5504122 gacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgtgcactaatcaagcgttgttttccctgagaatcgaacc 5504038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 17642021 - 17642105
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| ||||||||||   ||  |||||||||||||||||||||  |||| |||||| |||| ||||||||||||    
T  17642021 gacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 17642105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 28324629 - 28324681
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  28324629 atgcgtagaggcatgcgcactgaccaagtgttgtttccccggggaatcgaacc 28324681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 34719867 - 34719783
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||| |||||||||  |||  ||||||||||||||||||||| ||||||||| || ||   ||||||||||||    
T  34719867 gacccaccaaaggtgagcgactaatctgactcgtgcgtagaggcatgcgcactggtcaagcgttattcccagtgggaatcgaacc 34719783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 16956570 - 16956486
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttcccc 374  Q
    |||||||||||  ||||||||||||||||  ||||||||   ||  ||||||||||||||||||||| |||| ||||||| ||||    
T  16956570 cgcactggtttccgacccaccaaaggtgagtgactaatccggctcgtgcgtagaggcatgcgcactggtcaaacgttgttacccc 16956486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 9659197 - 9659279
Alignment:
Q  304 acccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||| ||||||||||   || ||||||| |||||||||||||  |||| ||||| |||||| ||||||||||||    
T  9659197 acccaccaaaggtggacgactaatccggctcatgcgtaaaggcatgcgcactagtcaaacgttg-ttcccctgggaatcgaacc 9659279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 10336614 - 10336523
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| || ||| |||||||| |||| |||||   || |||||||||||||||||||||| |||||||||||| |||| |  |||||||||    
T  10336614 ggttttcgatccatcaaaggtggacgattaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaacc 10336523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 50503411 - 50503462
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||||||||| ||||| |||||| |||| ||||||||||||    
T  50503411 tgcgtagaggcatgcgcactggtcaagtgttgttccccctgggaatcgaacc 50503462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 8764095 - 8763998
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||| |||| ||||||||||   ||  |||||||||||||||||||||  |||| |||||| |||| ||||| ||||||    
T  8764095 cgcaccggtttccgacccaccaacggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaaacgaacc 8763998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 11397906 - 11397989
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| ||||||||||  ||| |||||||||||||| |||| ||  ||| ||||| ||||||  |||||||||||    
T  11397906 gacccaccaaaggtggacgactaatccgactcatgcgtagaggcatacgcattggccaaacgttg-ttcccctcggaatcgaacc 11397989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 387
Target Start/End: Original strand, 30927732 - 30927828
Alignment:
Q  291 gcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| ||||| |||||||||||| ||| ||||||||||   || |||||||||||||||| || ||  ||||||||||| || | || |||||||||    
T  30927732 gcaccggtttctgacccaccaaaagtggacgactaatccggctcatgcgtagaggcatgcacattggccaagcgttgttccctctggaaatcgaacc 30927828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 48798119 - 48798171
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||||||||  |||||||||||| |||| || |||||||||    
T  48798119 atgcgtagaggcatgcgcactagtcaagcgttgttccccctggaaatcgaacc 48798171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 387
Target Start/End: Complemental strand, 16263607 - 16263552
Alignment:
Q  332 cttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||||||||||||  ||||||||||| | || || |||||||||    
T  16263607 cttatgcgtagaggcatgcgcactggccaagcgttgttcctcctggaaatcgaacc 16263552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 17358481 - 17358572
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||||| |||| ||||| |||||||   || ||||||| ||||||||||| || ||||||||||||  ||| | ||||||||||    
T  17358481 ggtttctgacccactaaagatgaacaactaatcgggctcatgcgtaaaggcatgcgcattggtcaagcgttgttctccctgagaatcgaacc 17358572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 18915957 - 18915874
Alignment:
Q  304 acccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||| ||||| |||||||||   ||  ||||||||||||||| |||||  |||| |||||| |||| ||||||||||||    
T  18915957 acccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgcacactggccaagtgttgttccccctgggaatcgaacc 18915874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 21849215 - 21849305
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||||||||||  |||| |||||||||   ||  ||||||||||||||||||||   ||||||||| |||||| ||||||||||||    
T  21849215 ggttttcgacccaccaatagtgagcgactaatccggctcgtgcgtagaggcatgcgcactagccaagcgttg-ttcccctgggaatcgaacc 21849305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 32150932 - 32151023
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| |||||| ||||||||| ||||||||    || ||||||| ||||||||||||||| |||  |||||| |||| || |||||||||    
T  32150932 ggttttcgacccatcaaaggtgagcgactaattcggctcatgcgtaaaggcatgcgcactgaccaaatgttgttccccctggaaatcgaacc 32151023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 43959871 - 43959922
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||||||||  ||||||||||| |||| |||||| |||||    
T  43959871 tgcgtagaggcatgcgcactggccaagcgttgttccccctgggaattgaacc 43959922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 9853293 - 9853378
Alignment:
Q  302 tgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||| |||| |||||    |  || |||||||||||||||||| | || ||||||||||||  |||||||||||    
T  9853293 tgacccaccaaaggtggacgattaatctggttcgtgtgtagaggcatgcgcactggtaaaacgttgtttcccctaggaatcgaacc 9853378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 10422874 - 10422813
Alignment:
Q  308 accaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||||||||| ||||||||||   || ||||||||||||||||||||||  |||| ||||||    
T  10422874 accaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 10422813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 18649404 - 18649453
Alignment:
Q  338 cgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||||||| |||||||||||| |||| |  |||||||||    
T  18649404 cgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaacc 18649453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 26660241 - 26660145
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||  |||||||||   || ||||||||||||||||| |||||||||  |||||| |||  || |||||||||    
T  26660241 cgcaccggtttccgacccaccaaaggtgg-cgactaatccggctcatgcgtagaggcatgcgtactgatcaaatgttgttccccgtggaaatcgaacc 26660145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 33004065 - 33004114
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    |||||||||||||||||||||  ||||| |||||||||| || |||||||    
T  33004065 tgcgtagaggcatgcgcactggccaagcattgtttcccctggaaatcgaa 33004114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 33498863 - 33498920
Alignment:
Q  310 caaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttg 367  Q
    |||||||| ||||||||||   || ||||||||||||||||||||||  |||||||||    
T  33498863 caaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttg 33498920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 32930 - 32882
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcg 383  Q
    ||||||||||||||| ||||||| ||||||||||| | || ||||||||    
T  32930 atgcgtagaggcatgtgcactgaccaagcgttgttcctcctgggaatcg 32882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 2567367 - 2567283
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||| || ||| ||||||  |||  || ||||||||||||||||||  |||||||||||| ||| |  |||||||||    
T  2567367 gacccaccaaagatggacggctaatctgactcgtgagtagaggcatgcgcactggccaagcgttgttttccccgaaaatcgaacc 2567283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 387
Target Start/End: Complemental strand, 31152803 - 31152723
Alignment:
Q  307 caccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||| |||||||||   |||  || ||||||||| ||||||||| |||||||| || |||| || |||||||||    
T  31152803 caccaaaggtggacgactaatttgactcgtgtgtagaggcacgcgcactgaccaagcgttattcccccgggaaatcgaacc 31152723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 387
Target Start/End: Original strand, 38859121 - 38859217
Alignment:
Q  291 gcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| |||||| |||||| ||||||||  ||| |||||  |||  |||||||||||||| ||| ||| ||| | ||||| |||| ||||||||||||    
T  38859121 gcaccggttttcgacccatcaaaggtgggcgattaatctgactcgtgcgtagaggcatgtgcattgaccaaacattgttacccctgggaatcgaacc 38859217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 8717 - 8801
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| ||||||||||   || ||||||||||||| ||||||||  ||||||||||| |||| ||||||||||||    
T  8717 gacccaccaaaggtggacgactaatccagctcatgcgtagaggcaagcgcactggccaagcgttgttccccctgggaatcgaacc 8801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 50405620 - 50405704
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||| ||||  |||||||||  |||  ||||||||||||||||||||| |||||||||||||||||  |||||||||||    
T  50405620 gacccaccaatggtgggcgactaatccgactcgtgcgtagaggcatgcgcactggtcaagcgttgtttcccctcggaatcgaacc 50405704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 290 - 373
Target Start/End: Original strand, 35998575 - 35998658
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccc 373  Q
    ||||| ||||| |||||||| ||||||| |||| |||||  |||  |||||||||||||| |||||||||||||||||||||||    
T  35998575 cgcaccggtttctgacccactaaaggtggacgattaatccaactcgtgcgtagaggcatgtgcactgatcaagcgttgtttccc 35998658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 373
Target Start/End: Original strand, 24506665 - 24506735
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccc 373  Q
    |||||||||| ||||| |||||||||  ||| ||||||||||||||| |||||| ||||||||||||||||    
T  24506665 gacccaccaatggtgagcgactaatctgactcatgcgtagaggcatgtgcactggtcaagcgttgtttccc 24506735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 30045924 - 30045827
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||||  |||||| |||||||| ||||||||||| |||  ||||||||| |||||||||||  ||||||||||| ||||  |||||||||||    
T  30045924 cgcactagtttacgacccatcaaaggtggacgactaatcagactcgtgcgtagagacatgcgcactggccaagcgttgttccccctaggaatcgaacc 30045827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 43330742 - 43330819
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccc 373  Q
    ||||||||||||||||||||||  |||||||||   ||  ||||||||||||||||||||| ||||| ||||||||||    
T  43330742 ggtttttgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagtgttgtttccc 43330819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 47219247 - 47219150
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||| |||||||| ||||||||||   || |||||||||||||||||||||   |||||||||||||||  ||||||||||||    
T  47219247 cgcaccggtttccgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactagccaagcgttgtttcccttgggaatcgaacc 47219150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 54261329 - 54261232
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||| ||||||||||||||||||   || ||||||||||||||||||||||  ||||||||||| | ||  |||||||||||    
T  54261329 cgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctaggaatcgaacc 54261232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 26043909 - 26043818
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||| |||||||||||| |||||||||   || ||||||||||||||||||||||  |||| ||||||  ||| ||||||||||||    
T  26043909 ggtttctgactcaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttctccctgggaatcgaacc 26043818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 7328946 - 7328850
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||| |||||||||||||||  |||||||||   || ||||||| ||||||||||||||  |||| |||||| |||| ||||||||||||    
T  7328946 cgcaccggttttcgacccaccaaaggtgggcgactaatccggctcatgcgta-aggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 7328850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 367
Target Start/End: Complemental strand, 23511670 - 23511593
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttg 367  Q
    ||||| |||||| |||||| |||||||| |||| |||||  ||| |||||||||||||||||||||| |||| |||||    
T  23511670 cgcaccggttttcgacccatcaaaggtggacgattaatccgactcatgcgtagaggcatgcgcactggtcaaacgttg 23511593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 28572215 - 28572312
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||  |||||||||   ||  |||||||||||||||  ||||  |||||||||||||||| ||||||||||||    
T  28572215 cgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcatactggccaagcgttgtttcccctgggaatcgaacc 28572312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 45877557 - 45877460
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||| ||| |||||||||||||||   || ||||||||||||||| ||||||  |||| ||||||||||| || |||||||||    
T  45877557 cgcaccggtttccgacccatcaatggtgaacgactaatccggctcatgcgtagaggcatgtgcactggccaagtgttgtttcccctggaaatcgaacc 45877460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 51060285 - 51060382
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||| |||| ||||||||||    | ||||||||||||||||||||||| |||| |||||| |||| | ||||||||||    
T  51060285 cgcaccggtttccgacccaccaatggtggacgactaatccagttcatgcgtagaggcatgcgcactgaccaagtgttgttccccctgagaatcgaacc 51060382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 29128009 - 29127925
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||  |||||||||   || ||||||||||||||||||||||| |||| ||||||  ||| || |||||||||    
T  29128009 gacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactgaccaagtgttgttctccctggaaatcgaacc 29127925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 35316046 - 35315962
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||| |||  |||||||||   || ||||||||||||||||||||||  |||| |||||| |||| ||||||||||||    
T  35316046 gacccaccaaaagtgggcgactaatccagctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 35315962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 3136698 - 3136777
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||| |||||  |||| |||||||||| ||||||||||  ||| ||||||||||||||||||||||  |||| ||||||    
T  3136698 cgcaccggtttccgaccaaccaaaggtggacgactaatccgactcatgcgtagaggcatgcgcactgcccaagtgttgtt 3136777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 4638211 - 4638160
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||| |||||||||| |||||||||||||| || ||||||||||||    
T  4638211 tgcgtagaggtatgcgcactggtcaagcgttgtttctcctgggaatcgaacc 4638160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 25295049 - 25294966
Alignment:
Q  304 acccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||| |||| ||||||||||   || |||| |||||||||||||||||  |||| ||||||||||||| ||||| ||||    
T  25295049 acccaccaatggtggacgactaatccggctcatgcatagaggcatgcgcactggccaagtgttgtttccccagagaatcaaacc 25294966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 374
Target Start/End: Original strand, 34374459 - 34374530
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttcccc 374  Q
    ||||||||||||  |  |||||||||  |||||||||| |||||||||||||||| |||| |||||||||||    
T  34374459 gacccaccaaagaagggcgactaatccgacttatgcgttgaggcatgcgcactgaccaagtgttgtttcccc 34374530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 45450471 - 45450530
Alignment:
Q  310 caaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||||||| ||||||||||   ||||||||||||||||||||||||| |||||| |||||    
T  45450471 caaaggtggacgactaatctagcttatgcgtagaggcatgcgcactggtcaagcattgtt 45450530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 49198448 - 49198357
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| ||| ||||||| |||| ||||||||||   || ||||||||||||||||||||||  |||| |||||| ||||  |||||||||||    
T  49198448 ggtttctgatccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctaggaatcgaacc 49198357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 15795544 - 15795593
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||||||    
T  15795544 tgcgtagaggcatgcgcactgaccaagcgttg-ttcccctgggaatcgaac 15795593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 51683009 - 51683055
Alignment:
Q  341 agaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||||    
T  51683009 agaggcatgcgcactggtcaagcgttgttccccctgggaatcgaacc 51683055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 15285757 - 15285802
Alignment:
Q  310 caaaggtgaacgactaatcatacttatgcgtagaggcatgcgcact 355  Q
    |||||||||||||||||||  ||||||| |||||||||||||||||    
T  15285757 caaaggtgaacgactaatccaacttatgtgtagaggcatgcgcact 15285802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 29136002 - 29135921
Alignment:
Q  304 acccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    ||||||||| |||| | ||||||||   || ||||||||||||||||||||||  |||| |||||| |||| ||||||||||    
T  29136002 acccaccaatggtggaagactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaa 29135921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 33251765 - 33251668
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||||| |||||| |||| ||| ||||||||||   || |||||||||||||||| |||||  ||| ||||||| || | ||||||||||||    
T  33251765 cgcactcgttttcgacccatcaaatgtggacgactaatccggctcatgcgtagaggcatgcacactggccaaacgttgttcccaccgggaatcgaacc 33251668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 40944973 - 40944890
Alignment:
Q  302 tgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    ||||||||||||||||| |||||||||   || ||||||||||||||||  |||| | ||| |||||| |||| |||||||||||    
T  40944973 tgacccaccaaaggtgagcgactaatccg-ctcatgcgtagaggcatgcatactggttaagtgttgttccccctgggaatcgaac 40944890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 3507537 - 3507616
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||| |||||  |||||||||||||||| |||||||||   ||  |||||||||||||||||||||  |||| ||||||    
T  3507537 cgcaccggtttccgacccaccaaaggtgagcgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtt 3507616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 31072935 - 31072884
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||| ||||||| ||||||||||| |||| || |||||||||    
T  31072935 tgcgtagaggcatgtgcactgaccaagcgttgttccccctggaaatcgaacc 31072884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 45402368 - 45402419
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcac 354  Q
    ||||||| ||||||||||||||||||   || ||||||||||||||||||||    
T  45402368 gacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcac 45402419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 40660332 - 40660398
Alignment:
Q  291 gcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactga 357  Q
    |||| |||||| ||||||||||||||||| || |||||    | |||||||||||||||||||||||    
T  40660332 gcaccggttttcgacccaccaaaggtgaatgattaatccggttcatgcgtagaggcatgcgcactga 40660398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 49021207 - 49021273
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactg 356  Q
    ||||| |||||  |||||||||| |||| ||||||||||   || ||||||||||||||||||||||    
T  49021207 cgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactg 49021273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 52364850 - 52364900
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    ||||||||||||||||||||| |||||||||||| |  | |||||||||||    
T  52364850 tgcgtagaggcatgcgcactggtcaagcgttgttccttctgggaatcgaac 52364900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 2029271 - 2029352
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttc 371  Q
    |||||||||||  |||||| ||| ||||  |||||||||   || ||||||||||||||||| ||| | |||||||||||||    
T  2029271 cgcactggtttgcgacccatcaatggtgggcgactaatccagctcatgcgtagaggcatgcgtactaaccaagcgttgtttc 2029352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 385
Target Start/End: Complemental strand, 3755655 - 3755578
Alignment:
Q  308 accaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    |||||||||  ||||||||||   || |||||||||| ||||||||||| |||| ||||||| | || ||||||||||    
T  3755655 accaaaggtagacgactaatccggctcatgcgtagagacatgcgcactggtcaaacgttgttcctcctgggaatcgaa 3755578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 13894029 - 13893932
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||| || ||||||||||||  |||||||||   ||  || ||||||||||||||| ||| ||||||||||| |||| || |||| ||||    
T  13894029 cgcaccggttttcgatccaccaaaggtgggcgactaatccggctcgtgtgtagaggcatgcgcattgaccaagcgttgttccccctggaaatccaacc 13893932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 383
Target Start/End: Original strand, 29762159 - 29762252
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcg 383  Q
    ||||| |||||  |||||||||| |||| ||||||||||   || |||| |||||||||||||||||  |||| |||||| |||| | ||||||    
T  29762159 cgcaccggtttccgacccaccaatggtggacgactaatccagctcatgcatagaggcatgcgcactggccaagtgttgttgcccctgagaatcg 29762252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 30767251 - 30767348
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||||  |||||||||||||||  |||||||||   ||  ||||||||||||||| |||||  |||| |||||| |||| || |||||||||    
T  30767251 cgcactagtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcacactggccaagtgttgttccccctggaaatcgaacc 30767348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 41223076 - 41223125
Alignment:
Q  324 taatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccc 373  Q
    |||||| ||||||||||||||||||||||| ||  ||| |||||||||||    
T  41223076 taatcagacttatgcgtagaggcatgcgcattggccaaacgttgtttccc 41223125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 42412802 - 42412875
Alignment:
Q  314 ggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||||||   || ||||||||||||||| |||||   ||||||||||| |||| ||||||||||||    
T  42412802 ggtgagcgactaatccggctcatgcgtagaggcatgggcacttgccaagcgttgttccccccgggaatcgaacc 42412875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 6462470 - 6462418
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||||||||||  |||||||||||  ||| | ||||||||||    
T  6462470 atgcgtagaggcatgcgcactggccaagcgttgttctccctgtgaatcgaacc 6462418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 26207850 - 26207902
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||| |||||  ||||||||||| |||  ||||||||||||    
T  26207850 atgcgtagaggcatgcacactggacaagcgttgttccccgtgggaatcgaacc 26207902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 26590319 - 26590367
Alignment:
Q  339 gtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||| |||||| ||||||||||| |||| | ||||||||||    
T  26590319 gtagaggcatgcacactgaccaagcgttgttccccctgagaatcgaacc 26590367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 41630529 - 41630613
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| ||||||||||  |||||||||   || ||| ||||||||||||||||||  ||||||||||| |||  |||||| |||||    
T  41630529 gaccaaccaaaggtgggcgactaatccggctcatgtgtagaggcatgcgcactgggcaagcgttgttccccttgggaattgaacc 41630613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 47471921 - 47471838
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| |||||||||    || ||||||||| |||||||||||   ||||| ||| |||||| ||||||||||||    
T  47471921 gacccaccaaaggtggacgactaattcggctcatgcgtagaagcatgcgcactagccaagcattg-ttcccctgggaatcgaacc 47471838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 676 - 579
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||| |||||||||   || || ||||||||||||| ||||||||||| |||||| |||| | ||||||||||    
T  676 cgcaccggtttccgacccaccaaaggtgagcgactaatctggctcatacgtagaggcatgcacactgatcaagtgttgttccccctgcgaatcgaacc 579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 319513 - 319444
Alignment:
Q  305 cccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttcccc 374  Q
    ||||||||||||| ||||||||||   || |||| |||||| ||||||||||  ||||||||||| ||||    
T  319513 cccaccaaaggtggacgactaatccagctcatgcatagagggatgcgcactggccaagcgttgttccccc 319444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 15234084 - 15234161
Alignment:
Q  310 caaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||||||||||  |||| ||||||||||||||||||||| ||||| |||||| |||| | ||||||||||    
T  15234084 caaagatgaacgactaatctaacttgtgcgtagaggcatgcgcactggtcaagtgttgttccccctgagaatcgaacc 15234161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 25540407 - 25540504
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||||||||||| ||||||||||   ||  |||||||||||||||||||||  ||||||||||| ||||  |||||||||||    
T  25540407 cgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctaggaatcgaacc 25540504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 41220738 - 41220641
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||| |||||||||||||||||    || ||||||||||||||||||||||  ||||||||||| | || ||||||||||||    
T  41220738 cgcaccggtttccgacccactaaaggtgaacgactaattcggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacc 41220641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 21286501 - 21286450
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  21286501 tgcgtagaggcatgcgcactggtcaagcgttgtttcgcctgggaatcgaacc 21286450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 22593224 - 22593142
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    ||||||||||||||| ||||||||||   || ||||||||||||||||||||||  ||| ||||||| |||| |||||||||||    
T  22593224 gacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaa-cgttgttccccctgggaatcgaac 22593142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 385
Target Start/End: Original strand, 6358160 - 6358249
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    |||||| |||||||||| |||| ||||||||||   || ||||||||||||||||||||||  |||| |||||| |||| || |||||||    
T  6358160 ggttttcgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctggaaatcgaa 6358249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 12455413 - 12455316
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||| ||||| |||||||||   ||  |||||||||||||||||||||   ||||||||||||||| || |||||||||    
T  12455413 cgcaccggtttccgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgcgcactggctaagcgttgtttcccctggaaatcgaacc 12455316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 2528365 - 2528441
Alignment:
Q  311 aaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| ||| |||||||||   |||||| |||||||||||| |||||| ||||||||||| |||| ||||||||||||    
T  2528365 aaagatgagcgactaatccggcttatgtgtagaggcatgcacactgaccaagcgttgttccccctgggaatcgaacc 2528441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 3643905 - 3643969
Alignment:
Q  305 cccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||||||||||| ||||||||||   || ||||||||||||||||||||||  |||||||||||    
T  3643905 cccaccaaaggtggacgactaatccagctcatgcgtagaggcatgcgcactggccaagcgttgtt 3643969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 10026632 - 10026716
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||  |||||||||   || ||||||||||||||||||||||  ||| ||||||| |||| | ||||||||||    
T  10026632 gacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttccccctgagaatcgaacc 10026716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 10046493 - 10046576
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||  |||||||||   || |||||||||||||||||||||| |||| |||||||||||  | ||||||||||    
T  10046493 gacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactg-tcaaacgttgtttcccttgagaatcgaacc 10046576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 10669682 - 10669598
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||||||| |||||  |||  ||||||||| |||||||||||  |||||||||||  ||| ||||||| ||||    
T  10669682 gacccaccaaaggtgaacgattaatccgactcgtgcgtagagacatgcgcactggccaagcgttgttctccctgggaatcaaacc 10669598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 386
Target Start/End: Complemental strand, 16325698 - 16325602
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaac 386  Q
    ||||| |||||  |||||||||| |||| ||||||||||   || |||||||||||||||| |||||  |||| |||||| |||| |||||||||||    
T  16325698 cgcaccggtttccgacccaccaatggtggacgactaatctggctcatgcgtagaggcatgcacactggccaagtgttgttccccctgggaatcgaac 16325602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 38962859 - 38962787
Alignment:
Q  297 gtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    |||| |||||||||||||||| ||||||||||    | ||||||||||||||||||||||  |||||||||||    
T  38962859 gtttctgacccaccaaaggtggacgactaatccggttcatgcgtagaggcatgcgcactggccaagcgttgtt 38962787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 331590 - 331507
Alignment:
Q  304 acccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||  |||||||||   || ||||||||| ||||||||||||  |||| |||||| |||| ||||||||||||    
T  331590 acccaccaaaggtgggcgactaatccggctcatgcgtagaagcatgcgcactggccaagtgttgttccccctgggaatcgaacc 331507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 3811700 - 3811791
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| ||||||||||||||||  ||| |||||   || ||||||||||||||||||| ||| |||| |||||| || | ||||||||||||    
T  3811700 ggtttctgacccaccaaaggtgggcgagtaatccggctcatgcgtagaggcatgcgcattgaccaagtgttgttccctctgggaatcgaacc 3811791  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 385
Target Start/End: Complemental strand, 12864327 - 12864232
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    ||||| |||||  |||||||||| |||| ||||||||||   || ||||| ||||||||||||||||| |||| |||||| |||| || |||||||    
T  12864327 cgcaccggtttccgacccaccaatggtggacgactaatctggctcatgcgcagaggcatgcgcactgaccaagtgttgttccccctggaaatcgaa 12864232  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 39201524 - 39201606
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    ||||||||||||||||||||||||||   || |||||||||||||||| |||||  ||| | ||||| |||| | ||||||||    
T  39201524 gacccaccaaaggtgaacgactaatccggctcatgcgtagaggcatgcacactggccaaacattgttccccctgagaatcgaa 39201606  T

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Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 3848925 - 3849014
Alignment:
Q  298 tttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| |||||| |||||||||||||||||||  |||  ||||||||| ||||||| |||  ||| |||||||||||| |  |||||||||    
T  3848925 ttttcgacccatcaaaggtgaacgactaatccgactcgtgcgtagagacatgcgccctggccaaacgttgtttcccctgataatcgaacc 3849014  T

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Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 7747377 - 7747280
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||| ||||||||||||||||||   || |||||||||||||||| |||||  ||| ||||||| | ||  |||||||||||    
T  7747377 cgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcacactggccaaacgttgttcctcctaggaatcgaacc 7747280  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 14169612 - 14169709
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||| |||  ||||||||||   || |||||||||| ||||||||||| ||||| |||||| |||| | ||||||||||    
T  14169612 cgcaccggtttccgacccaccaatggtagacgactaatccggctcatgcgtagagacatgcgcactggtcaagtgttgttcccccggagaatcgaacc 14169709  T

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Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 18902533 - 18902630
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||  |||||||||   ||  ||||||||| || |||||||| |||||||||||| |||  ||||||||||||    
T  18902533 cgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgtagagacacgcgcactggtcaagcgttgttccccgtgggaatcgaacc 18902630  T

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Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 38005489 - 38005408
Alignment:
Q  306 ccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||  |||||||||   || ||| ||||||||||||||||||  ||||||||||| |||  ||||||||||||    
T  38005489 ccaccaaaggtgggcgactaatccggctcatgtgtagaggcatgcgcactggccaagcgttgttccccttgggaatcgaacc 38005408  T

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Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 39806888 - 39806985
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| ||||| ||| |||||||||||| | ||||||||  |||  || ||||||||||||||||||  ||| ||||||||| |  ||||||||||||    
T  39806888 cgcaccggtttatgaaccaccaaaggtggatgactaatccgactcgtgtgtagaggcatgcgcactggccaaacgttgtttctcttgggaatcgaacc 39806985  T

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Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 41031909 - 41032006
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||  |||||||||||||||   ||||||||   ||  ||||||||||||||| |||||  |||| |||||| |||| ||||||||||||    
T  41031909 cgcactggtttccgacccaccaaaggtgggtgactaatccggctcgtgcgtagaggcatgcacactggccaagtgttgttccccctgggaatcgaacc 41032006  T

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Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 45263678 - 45263767
Alignment:
Q  298 tttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| |||||||||||| ||| ||| |||||   ||  |||||||||||||||||||||  ||||||||||| || | ||||||||||||    
T  45263678 ttttcgacccaccaaagatgagcgattaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccctctgggaatcgaacc 45263767  T

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Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 18649043 - 18649095
Alignment:
Q  304 acccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactg 356  Q
    |||||||||| |||| |||||||||  ||| ||||||||||||||||||||||    
T  18649043 acccaccaaaagtgagcgactaatccgactcatgcgtagaggcatgcgcactg 18649095  T

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Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 387
Target Start/End: Complemental strand, 24179670 - 24179575
Alignment:
Q  291 gcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||| ||||||| ||||||||||| || ||||||||||   || ||||||||||||||| ||||||  ||| ||||| |||||| | ||||||||||    
T  24179670 gcaccggtttttaacccaccaaagatggacgactaatccggctcatgcgtagaggcatgtgcactggccaaacgttg-ttcccctgagaatcgaacc 24179575  T

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Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 374
Target Start/End: Original strand, 34346290 - 34346374
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttcccc 374  Q
    ||||| |||||  |||||||||||||||| ||| |||||  ||| |||||||||||||||| |||||  |||| |||||| ||||    
T  34346290 cgcaccggtttccgacccaccaaaggtgagcgattaatctgactcatgcgtagaggcatgcacactggccaagtgttgttccccc 34346374  T

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Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 8410188 - 8410137
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||||||||||  |||| |||||| |||| ||||||||||||    
T  8410188 tgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 8410137  T

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Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 37560270 - 37560179
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| |||||| |||||||| |||| |||||   ||  |||||||||||||||||||||| ||| ||||||| |||  | ||||||||||    
T  37560270 ggttttcgacccatcaaaggtggacgattaatccggctcgtgcgtagaggcatgcgcactgaccaaacgttgttccccttgagaatcgaacc 37560179  T

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Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 370
Target Start/End: Complemental strand, 41187907 - 41187872
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgttt 370  Q
    |||||||||||||||||||||| |||||||||||||    
T  41187907 atgcgtagaggcatgcgcactggtcaagcgttgttt 41187872  T

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Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 42770660 - 42770751
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||||||||||||||| |||| |||||   ||  |||| ||||||||||||||||  ||||||||||| |||| | |||| |||||    
T  42770660 ggttttcgacccaccaaaggtggacgattaatccggctcgtgcgaagaggcatgcgcactggccaagcgttgttccccctgagaattgaacc 42770751  T

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Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 44139541 - 44139490
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||| ||||||||  ||||||||||| |||| ||||||||||||    
T  44139541 tgcgtagaggcacgcgcactggccaagcgttgttccccctgggaatcgaacc 44139490  T

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Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 10106670 - 10106612
Alignment:
Q  311 aaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||||| ||||||||||  |||||||| |||| |||||||| || |||||||||||||    
T  10106670 aaaggtggacgactaatccgacttatgcatagaagcatgcgcgctaatcaagcgttgtt 10106612  T

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Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 10823163 - 10823066
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  ||||||| |||||||  |||||||||   ||  |||||||||||||||||||||  ||||||||||| | || ||||||| ||||    
T  10823163 cgcaccggtttccgacccacaaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcaaacc 10823066  T

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Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 29653684 - 29653635
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    |||||||||||||||||||||  |||||||||||| ||| || |||||||    
T  29653684 tgcgtagaggcatgcgcactgcccaagcgttgttttccctggaaatcgaa 29653635  T

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Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 34356309 - 34356212
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||| ||||  |||||| ||| |||| |||| |||||   || |||| |||||||||||||||||| |||| |||||| |||| || |||||||||    
T  34356309 cgcactcgtttccgacccatcaatggtgcacgattaatccggctcatgcatagaggcatgcgcactgaccaagtgttgttccccctggaaatcgaacc 34356212  T

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Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 26805393 - 26805333
Alignment:
Q  296 ggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactg 356  Q
    |||||| || ||||||||||||  |||||||||  ||| ||||||||||||||| ||||||    
T  26805393 ggttttcgagccaccaaaggtgggcgactaatccgactcatgcgtagaggcatgtgcactg 26805333  T

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Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 40968963 - 40969015
Alignment:
Q  335 atgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    |||||||||||||| |||||||| ||| |||||||| ||| || |||||||||    
T  40968963 atgcgtagaggcattcgcactgaccaaacgttgttttccctggaaatcgaacc 40969015  T

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Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 16971 - 16888
Alignment:
Q  304 acccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||||||||| |||||||||   ||  ||||||||| ||| |||||||| |||||||||||||||| | |||| |||||    
T  16971 acccaccaaaggtgagcgactaatctggctcgtgcgtagagacatacgcactgaccaagcgttgtttcccctgagaattgaacc 16888  T

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Target: scaffold0209 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 369
Target Start/End: Complemental strand, 12659 - 12600
Alignment:
Q  310 caaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||||||  |||||||||  ||| |||||||||||||||||||||| ||||||||||||    
T  12659 caaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 12600  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 68620 - 68526
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||| |||||||||||||||  |||||||||   ||  |||||||||||||||||||    ||||||||||| |||| ||||||||||||    
T  68620 cgcaccggttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac---ccaagcgttgttccccctgggaatcgaacc 68526  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 271123 - 271174
Alignment:
Q  336 tgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||||||| |||||||||||| ||||||||||| |||| ||||||||||||    
T  271123 tgcgtagagacatgcgcactgaccaagcgttgttccccctgggaatcgaacc 271174  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 155727 - 155809
Alignment:
Q  303 gacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaa 385  Q
    |||||||||||||||  |||||||||   ||  ||||||||||||||||||||   ||||||||||| |||| ||||||||||    
T  155727 gacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactagccaagcgttgttccccctgggaatcgaa 155809  T

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Target: scaffold0316 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 1617 - 1714
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||| |||||||||||||||  ||||||||    || ||||||||||||||||||||||   || ||||||| |||| || |||||||||    
T  1617 cgcaccggttttcgacccaccaaaggtgggcgactaatttggctcatgcgtagaggcatgcgcactggctaatcgttgttccccctggaaatcgaacc 1714  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 42835 - 42932
Alignment:
Q  290 cgcactggtttttgacccaccaaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtttccccagggaatcgaacc 387  Q
    ||||| |||||  |||||||||||||||  |||||||||   || ||| ||||||||||||||||||| ||||| |||||  |||  |||||||||||    
T  42835 cgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgtgtagaggcatgcgcactgaccaagcattgttctccctaggaatcgaacc 42932  T

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Target: scaffold0635 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 2114 - 2172
Alignment:
Q  311 aaaggtgaacgactaatcatacttatgcgtagaggcatgcgcactgatcaagcgttgtt 369  Q
    ||||||| ||||||||||  |||||||| |||| |||||||| || |||||||||||||    
T  2114 aaaggtggacgactaatccgacttatgcatagaagcatgcgcgctaatcaagcgttgtt 2172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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