View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17907_low_31 (Length: 220)
Name: NF17907_low_31
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17907_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 5688803 - 5688593
Alignment:
| Q |
1 |
gagctctcaaaatgggttatctaaccttaaacagatcggccttaacaacctttatcgcgttaggccaaaaagttctttcaagtatgagctataaaaatac |
100 |
Q |
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| T |
5688803 |
gagctctcaaaatgggttatctaaccttaaagagatcggccctaacaacctttatcgctttaggccaaaaagttctttcaagtacgagctataaaaatac |
5688704 |
T |
|
| Q |
101 |
tatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttannnnnnngaaaatattataaagactctcacaaaatttcttataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5688703 |
tatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttatttttttgaaaatattataaagactctcacaaaatttcttataa |
5688604 |
T |
|
| Q |
201 |
acattattttg |
211 |
Q |
| |
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||||||||||| |
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| T |
5688603 |
acattattttg |
5688593 |
T |
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