View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17907_low_33 (Length: 209)
Name: NF17907_low_33
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17907_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 5176175 - 5175999
Alignment:
| Q |
16 |
aatattggtgtgtctcaatcatctgcatgttgagattgtagtcttgatgcatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacat |
115 |
Q |
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| T |
5176175 |
aatattggtgtgtctcaatcatctgcatgttgagattgtagtcttgatacatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacat |
5176076 |
T |
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| Q |
116 |
cgactcaaaacacactctaaatgtttcaaagtgttggtgttactacacaacatttagaccgtgagatagtcgttatt |
192 |
Q |
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| T |
5176075 |
cgactcaaaacacactctaaatgtttcaaagtgttggtgttactacacaacatttaggccgtgagatagtcgttatt |
5175999 |
T |
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Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 5180440 - 5180284
Alignment:
| Q |
38 |
ctgcatgttgagattgtagtcttgatgcatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacatcgactcaaaac--acactctaa |
135 |
Q |
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| T |
5180440 |
ctgcaagttgagattgtagccttgatgcatggcgttcgcatgtgttggaaagaaggttcgcgtaaaatcatgttacattgactagaaacatacactccaa |
5180341 |
T |
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| Q |
136 |
atgtttcaaagtgttggtgttactacacaacatttagaccgtgagatagtcgttatt |
192 |
Q |
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| T |
5180340 |
ttgtttccaattgttggtgttactacacaacatttaagcaatgagataatcgttatt |
5180284 |
T |
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