View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17907_low_4 (Length: 500)

Name: NF17907_low_4
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17907_low_4
NF17907_low_4
[»] chr4 (2 HSPs)
chr4 (6-357)||(10327318-10327670)
chr4 (405-495)||(10327718-10327808)
[»] chr3 (3 HSPs)
chr3 (405-477)||(15552707-15552779)
chr3 (405-457)||(19642936-19642988)
chr3 (405-495)||(11514522-11514610)
[»] chr2 (2 HSPs)
chr2 (407-495)||(22996309-22996397)
chr2 (405-465)||(17564602-17564659)
[»] chr7 (2 HSPs)
chr7 (437-495)||(11571674-11571732)
chr7 (405-464)||(9763416-9763473)
[»] chr8 (1 HSPs)
chr8 (437-495)||(23191971-23192031)
[»] chr6 (1 HSPs)
chr6 (437-495)||(31126741-31126801)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 6 - 357
Target Start/End: Original strand, 10327318 - 10327670
Alignment:
Q  6 agattcaagctgagcaagtcaggaaacaagaaaagctggataaaa-aatgtagaagcatcacactgagtttttagctaagcattatcagatagagaagga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10327318 agattcaagctgagcaagtcaggaaacaagaaaagctggataaaaaaatgtagaagcatcacactgagtttttagctaagcattatcagatagtgaagga 10327417  T
Q  105 gcaagctgaaatggctaagactcaagcacatatggcaaagaagcaagatcagacaaatgatgggattaatgctctgttggagacgatgcagaagtagtag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10327418 gcaagctgaaatggctaagactcaagcacatatggcaaagaagcaagatcagacaaatgatgggattaatgctctgttggagatgatgcagaagtagtag 10327517  T
Q  205 aaaccatagaaactttagttgcacgcattttctttatgtttcttgctcctaactttttatgcatctcattgtttattgaatcagatacatttttctgctt 304  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10327518 aaaccatagaaactttagttgcacacattttctttatgtttcttgctcctaactttttatgcatctcattgtttattgaatctgatacatttttctgctt 10327617  T
Q  305 ctgataatatttgttttgatatattatttgcttctaatgttgatacaatcgtg 357  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10327618 ctgataatatttgttttgatatattatttgcttctgatgttgatacaatcgtg 10327670  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 405 - 495
Target Start/End: Original strand, 10327718 - 10327808
Alignment:
Q  405 gatgacaaaagggggagtaagacatataatggcatttaggctctgagtccactaagttaaataaaattaatttaggaaaaccttcttctca 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10327718 gatgacaaaagggggagtaagacatataatggcatttaggctctgagtccgctaagttaaataaaattaatttaggaaaaccttcttctca 10327808  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 405 - 477
Target Start/End: Complemental strand, 15552779 - 15552707
Alignment:
Q  405 gatgacaaaagggggagtaagacatataatggcatttaggctctgagtccactaagttaaataaaattaattt 477  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  15552779 gatgacaaaacggggagtaagatatataatgacatttaggctctgagtccactaaattaaataaaattaattt 15552707  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 405 - 457
Target Start/End: Original strand, 19642936 - 19642988
Alignment:
Q  405 gatgacaaaagggggagtaagacatataatggcatttaggctctgagtccact 457  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  19642936 gatgacaaaagggggagtaagacacataatagtatttaggctctgagtccact 19642988  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 495
Target Start/End: Complemental strand, 11514610 - 11514522
Alignment:
Q  405 gatgacaaaagggggagtaagacatataatggcatttaggctctgagtccactaagttaaataaaattaatttaggaaaaccttcttctca 495  Q
    ||||| |||| ||||||||||| |  ||||  |||||||||||| |||||||||| ||||  ||||| ||||||||| |||||||||||||    
T  11514610 gatgaaaaaaaggggagtaagatacgtaatatcatttaggctctaagtccactaaattaa--aaaatcaatttaggagaaccttcttctca 11514522  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 495
Target Start/End: Original strand, 22996309 - 22996397
Alignment:
Q  407 tgacaaaagggggagtaagacatataatggcatttaggctctgagtccactaagtta--aataaaattaatttaggaaaaccttcttctca 495  Q
    |||||||||||||||||||||||||  |  ||||||||||||||||||||||| |||  | |||||||||||| ||| |||||||||||||    
T  22996309 tgacaaaagggggagtaagacatat--taacatttaggctctgagtccactaaattaagattaaaattaattttggagaaccttcttctca 22996397  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 465
Target Start/End: Original strand, 17564602 - 17564659
Alignment:
Q  405 gatgacaaaagggggagtaagacatataatggcatttaggctctgagtccactaagttaaa 465  Q
    |||||||||||||| ||||||||||||||  ||||||||||||| ||||||||||||||||    
T  17564602 gatgacaaaagggg-agtaagacatataa--gcatttaggctctcagtccactaagttaaa 17564659  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 437 - 495
Target Start/End: Original strand, 11571674 - 11571732
Alignment:
Q  437 catttaggctctgagtccactaagttaaataaaattaatttaggaaaaccttcttctca 495  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||| || ||||||||||    
T  11571674 catttaggctccgagtccactaaattaaataaaattagtttaggagaatcttcttctca 11571732  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 464
Target Start/End: Complemental strand, 9763473 - 9763416
Alignment:
Q  405 gatgacaaaagggggagtaagacatataatggcatttaggctctgagtccactaagttaa 464  Q
    |||||||||||| |||||||||||||  || ||||  |||||||||||||||||||||||    
T  9763473 gatgacaaaaggaggagtaagacata--atagcatccaggctctgagtccactaagttaa 9763416  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 495
Target Start/End: Original strand, 23191971 - 23192031
Alignment:
Q  437 catttaggctctgagtccactaagttaaa--taaaattaatttaggaaaaccttcttctca 495  Q
    ||||||||||||||  ||||||| |||||  |||||||||||||||| ||| |||||||||    
T  23191971 catttaggctctgaacccactaaattaaagttaaaattaatttaggagaacattcttctca 23192031  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 495
Target Start/End: Original strand, 31126741 - 31126801
Alignment:
Q  437 catttaggctctgagtccactaagttaaa--taaaattaatttaggaaaaccttcttctca 495  Q
    |||||||  |||||||||||||| ||||   |||||||||||||||| |||||||||||||    
T  31126741 catttagattctgagtccactaaattaagattaaaattaatttaggagaaccttcttctca 31126801  T

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