View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17907_low_7 (Length: 470)
Name: NF17907_low_7
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17907_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 5125309 - 5125749
Alignment:
| Q |
13 |
aatattttatacggtgtttgacttttgtgcatctaaataacacatctcaacataaaaagtgaaatatttaagtaaactaattagtcggagttacatgatt |
112 |
Q |
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| T |
5125309 |
aatattttatacggtgtttaacttttgtgcatctaaataacacatctcaacataaaaagtgaaatatttaagtaaactaattagtcgttgttacatgatt |
5125408 |
T |
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| Q |
113 |
ataattgcatctcaaaataatttcaatttttagatcaaaagaaagaaagaaaataccactatttttacattcatatctataaccagtcaattattggtct |
212 |
Q |
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| T |
5125409 |
ataattgcatctcaaaataatttcaatttttagatcaaaagaaagaaagaaaataccactatttttacattgatatctataaccagtcaattattggtct |
5125508 |
T |
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| Q |
213 |
ctttacatagaaagtttgtccaaagcatggaaagaaagaagtacacaaccttacaattcaaaatgcttacacatttcaacaaagaacttttgcacacctt |
312 |
Q |
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| T |
5125509 |
ctttacatagaaagtttgtccaaagcatggaaagaaagaagtacacaaccttacaattcaaaatgcttacacatttcaacaaagaacttttgcacacctt |
5125608 |
T |
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| Q |
313 |
gcagattgaatcatcatcaacatcttcacatataatccatatctttaacatatggtcaaaactttttggcaagcacaattgtttgtgttatgagacttaa |
412 |
Q |
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| T |
5125609 |
gcagattgaatcatcatcaacatcttcacatataatccatctctttaacatatggtcaaaactttttggcaagcacaattgtttgtgttatgagacttaa |
5125708 |
T |
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| Q |
413 |
caatcaatagaaatacaagtctgagagatggctgaactatc |
453 |
Q |
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| T |
5125709 |
caatcaatagaaatacaagtctgagagatggctgaactatc |
5125749 |
T |
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