View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17907_low_9 (Length: 402)

Name: NF17907_low_9
Description: NF17907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17907_low_9
NF17907_low_9
[»] chr4 (10 HSPs)
chr4 (19-242)||(2918008-2918231)
chr4 (235-396)||(2917456-2917616)
chr4 (271-384)||(10396123-10396235)
chr4 (271-388)||(10396408-10396524)
chr4 (280-388)||(11197227-11197334)
chr4 (271-391)||(53468045-53468163)
chr4 (347-388)||(6975504-6975545)
chr4 (271-377)||(34946466-34946570)
chr4 (351-388)||(36608709-36608746)
chr4 (351-388)||(50002497-50002534)
[»] chr7 (4 HSPs)
chr7 (271-387)||(27597977-27598092)
chr7 (332-388)||(21416191-21416247)
chr7 (347-388)||(19122798-19122839)
chr7 (347-388)||(34218084-34218125)
[»] chr2 (5 HSPs)
chr2 (271-388)||(28226329-28226445)
chr2 (271-388)||(28226647-28226762)
chr2 (271-388)||(30219931-30220047)
chr2 (271-391)||(13792541-13792660)
chr2 (347-387)||(36178320-36178360)
[»] chr3 (3 HSPs)
chr3 (271-388)||(53595952-53596068)
chr3 (271-388)||(53596267-53596383)
chr3 (351-389)||(42342437-42342475)
[»] chr8 (3 HSPs)
chr8 (296-377)||(3670860-3670940)
chr8 (348-391)||(12156705-12156748)
chr8 (347-388)||(9507849-9507890)
[»] chr5 (4 HSPs)
chr5 (271-384)||(13042988-13043100)
chr5 (271-384)||(13112984-13113096)
chr5 (343-388)||(35150069-35150114)
chr5 (352-388)||(36522287-36522323)
[»] chr6 (1 HSPs)
chr6 (347-388)||(1127427-1127468)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 2918231 - 2918008
Alignment:
Q  19 attatgctatattttgccaaataagattaattatgttatcttggttgaaccggtttgtgaaatgtcgcaaaactattagttgataatgttagtgaatgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2918231 attatgctatattttgccaaataagattaattatgttatcttggttgaaccggtttgtgaaatgtcgcaaaactattagttgataatgttagtgaatgat 2918132  T
Q  119 ttgacatttttctaactctatatgacaaccnnnnnnncagtgagagaatttggagtgatgttatttgttgttgaacgtgattgttttaaggagaaatgag 218  Q
    ||||||||||| ||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2918131 ttgacatttttttaactctatatgacaacctttttttcagttagagaatttggagtgatgttatttgttgttgaacgtgattgttttaaggagaaatgag 2918032  T
Q  219 acttttaaaatgagttattacgat 242  Q
    ||||||||||||||||||||||||    
T  2918031 acttttaaaatgagttattacgat 2918008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 235 - 396
Target Start/End: Complemental strand, 2917616 - 2917456
Alignment:
Q  235 attacgatgatggaaagaagatcaatatttaatacggttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaata 334  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2917616 attacgatgatggaaagaagatcattatttaatacggttggaaatcaagtctgagtgatgatgtctcacgtcgactat-aaatggagtaaatgttgaata 2917518  T
Q  335 tacaagagaagagactcataaatccattatcttagggttttgggtaagagtgtgatgatgtc 396  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  2917517 tacaagagaagagactcataaatccactatcttagggttttggctaagagtgtgatgatgtc 2917456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 384
Target Start/End: Original strand, 10396123 - 10396235
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    |||||||||||||| |||||||| ||||||||| ||||| |  |||||||| |||||||||||||| ||||||  |||| |||||| |||||  ||||||    
T  10396123 gttggaaatcaagtgtgagtgattatgtctcacatcgacaag-aaatggaggaaatgttgaatatataagagagaagacccataaacccattgccttagg 10396221  T
Q  371 gttttgggtaagag 384  Q
    ||||| ||||||||    
T  10396222 gttttaggtaagag 10396235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 10396408 - 10396524
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    |||||||||||||| |||||||| ||||||||  | |||||  |||||||| |||||||| ||||| |||||| ||||| |||||| |||||  ||||||    
T  10396408 gttggaaatcaagtgtgagtgattatgtctcatattgactag-aaatggaggaaatgttggatatataagagaggagacccataaacccattgccttagg 10396506  T
Q  371 gttttgggtaagagtgtg 388  Q
    ||||||| ||||||||||    
T  10396507 gttttggataagagtgtg 10396524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 388
Target Start/End: Original strand, 11197227 - 11197334
Alignment:
Q  280 caagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagggttttgggt 379  Q
    ||||| |||||||| ||| ||||| |||||||  |||||||| ||| |||| ||||| |||||| ||||| |||||| |||||  |||||||||||||||    
T  11197227 caagtgtgagtgattatgcctcacatcgactag-aaatggaggaaacgttggatatataagagaggagacccataaacccattgccttagggttttgggt 11197325  T
Q  380 aagagtgtg 388  Q
    |||||||||    
T  11197326 aagagtgtg 11197334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 391
Target Start/End: Complemental strand, 53468163 - 53468045
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    |||||||||||||| |||||||| ||||||||| |||| ||  |||||||| |||||||||||||| || ||| ||||| ||||||  |||| | ||| |    
T  53468163 gttggaaatcaagtgtgagtgataatgtctcacatcgatta-gaaatggagcaaatgttgaatatataa-agaggagacccataaactcattgttttaag 53468066  T
Q  371 gttttgggtaagagtgtgatg 391  Q
     |||||| |||| ||||||||    
T  53468065 cttttggataagtgtgtgatg 53468045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 6975545 - 6975504
Alignment:
Q  347 gactcataaatccattatcttagggttttgggtaagagtgtg 388  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  6975545 gactcataaatccattatcttaagattttgggtaagagtgtg 6975504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 377
Target Start/End: Complemental strand, 34946570 - 34946466
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    |||||||||||||| || ||||| ||||||||| |||||||  |||||||| ||| |||| ||||  |||||||||||| |||||| |   | |||||||    
T  34946570 gttggaaatcaagtgtg-gtgataatgtctcacatcgactag-aaatggagcaaacgttggatatttaagagaagagacccataaacctgatgtcttagg 34946473  T
Q  371 gttttgg 377  Q
    |||||||    
T  34946472 gttttgg 34946466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 36608746 - 36608709
Alignment:
Q  351 cataaatccattatcttagggttttgggtaagagtgtg 388  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  36608746 cataaatccattgtcttaaggttttgggtaagagtgtg 36608709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 50002497 - 50002534
Alignment:
Q  351 cataaatccattatcttagggttttgggtaagagtgtg 388  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  50002497 cataaatccattgtcttaaggttttgggtaagagtgtg 50002534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 387
Target Start/End: Original strand, 27597977 - 27598092
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    |||||||||||||| |||||||| ||||||||| |||||||| |||| ||| ||| |||| ||||| |||||| ||||| |||||| ||||| |||||||    
T  27597977 gttggaaatcaagtgtgagtgataatgtctcacatcgactat-aaattgagcaaacgttggatatataagagaggagacccataaacccattgtcttagg 27598075  T
Q  371 gttttgggtaagagtgt 387  Q
    |||||| ||||||||||    
T  27598076 gttttgcgtaagagtgt 27598092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 21416247 - 21416191
Alignment:
Q  332 atatacaagagaagagactcataaatccattatcttagggttttgggtaagagtgtg 388  Q
    ||||| |||||| ||||| |||||| |||||  ||||||||||||||||||||||||    
T  21416247 atatataagagaggagacccataaacccattgccttagggttttgggtaagagtgtg 21416191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 19122798 - 19122839
Alignment:
Q  347 gactcataaatccattatcttagggttttgggtaagagtgtg 388  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  19122798 gactcataaatccattgccttaaggttttgggtaagagtgtg 19122839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 34218125 - 34218084
Alignment:
Q  347 gactcataaatccattatcttagggttttgggtaagagtgtg 388  Q
    |||||||||| ||||| ||||| |||||||||||||||||||    
T  34218125 gactcataaacccattgtcttaaggttttgggtaagagtgtg 34218084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 28226329 - 28226445
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    |||||||||||||| |||||| | ||||| ||| |||||||  |||||||| ||| |||| ||||| |||||| ||||| ||||||  |||| |||||||    
T  28226329 gttggaaatcaagtgtgagtgttaatgtcccacatcgactag-aaatggaggaaacgttggatatataagagaggagacccataaacacattgtcttagg 28226427  T
Q  371 gttttgggtaagagtgtg 388  Q
    ||||| ||||||||||||    
T  28226428 gttttaggtaagagtgtg 28226445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 28226647 - 28226762
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    |||||||||||||| ||| |||| || || ||| ||||| |  |||||| | |||| ||| ||||| |||||| |||||||||||| ||||| ||||| |    
T  28226647 gttggaaatcaagtgtgactgataatatcacacatcgacaag-aaatggggcaaatattggatatataagagaggagactcataaacccattgtctta-g 28226744  T
Q  371 gttttgggtaagagtgtg 388  Q
    ||||| ||||||||||||    
T  28226745 gtttttggtaagagtgtg 28226762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 388
Target Start/End: Complemental strand, 30220047 - 30219931
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    |||||||||||||| |||| ||| ||||| ||| |||||||  || ||||| |||||||| |||   |||||| ||||| |||||| | ||| |||||||    
T  30220047 gttggaaatcaagtgtgagcgattatgtcccacatcgactag-aactggaggaaatgttggatacttaagagaggagacccataaaccaattgtcttagg 30219949  T
Q  371 gttttgggtaagagtgtg 388  Q
    |||||| ||| |||||||    
T  30219948 gttttgtgtaggagtgtg 30219931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 391
Target Start/End: Complemental strand, 13792660 - 13792541
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    |||||||||||||| |||||||| ||||| ||| || ||||  |||||||| |||| ||  ||||| |||||| ||||| | || | |||||  |||  |    
T  13792660 gttggaaatcaagtgtgagtgattatgtcccacatcaactag-aaatggaggaaatatttgatatataagagaggagacccgtacacccattgacttgag 13792562  T
Q  371 gttttgggtaagagtgtgatg 391  Q
    |||||||||||||||||||||    
T  13792561 gttttgggtaagagtgtgatg 13792541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 36178360 - 36178320
Alignment:
Q  347 gactcataaatccattatcttagggttttgggtaagagtgt 387  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  36178360 gactcataaacccattgtcttaaggttttgggtaagagtgt 36178320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 53595952 - 53596068
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    ||||||||||||||  ||||||| ||||| ||| | |||||  |||| ||| |||||||| ||||| |||||| ||||| |||||| || ||| |||| |    
T  53595952 gttggaaatcaagtgcgagtgattatgtcccacattgactag-aaatagagaaaatgttggatatataagagaggagacccataaacccgttaccttaag 53596050  T
Q  371 gttttgggtaagagtgtg 388  Q
    ||||||||||||||||||    
T  53596051 gttttgggtaagagtgtg 53596068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 53596267 - 53596383
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    ||||||||||||||  ||||||| ||||| ||| | |||||  |||| ||| |||||||| ||||| |||||| ||||| |||||| || ||| |||| |    
T  53596267 gttggaaatcaagtgcgagtgattatgtcccacattgactag-aaatagagaaaatgttggatatataagagaggagacccataaacccgttaccttaag 53596365  T
Q  371 gttttgggtaagagtgtg 388  Q
    ||||||||||||||||||    
T  53596366 gttttgggtaagagtgtg 53596383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 389
Target Start/End: Complemental strand, 42342475 - 42342437
Alignment:
Q  351 cataaatccattatcttagggttttgggtaagagtgtga 389  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  42342475 cataaatccattgtcttaaggttttgggtaagagtgtga 42342437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 3670940 - 3670860
Alignment:
Q  296 tgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagggttttgg 377  Q
    |||||||| |||||||  |||||||| ||| |||| ||||| |||||| ||||| |||||||||| || |||||||||||||    
T  3670940 tgtctcacatcgactag-aaatggaggaaacgttggatatataagagatgagacccataaatccactaccttagggttttgg 3670860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 12156748 - 12156705
Alignment:
Q  348 actcataaatccattatcttagggttttgggtaagagtgtgatg 391  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||    
T  12156748 actcataaacccattgtcttaaggttttgggtaagagtgtgatg 12156705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 9507849 - 9507890
Alignment:
Q  347 gactcataaatccattatcttagggttttgggtaagagtgtg 388  Q
    |||||||||| |||||| |||| |||||||||||||||||||    
T  9507849 gactcataaacccattaccttaaggttttgggtaagagtgtg 9507890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 384
Target Start/End: Original strand, 13042988 - 13043100
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    |||||||||||||  |||||||| || || ||| |||||||  |||| ||| |||  ||| ||||| |||||| ||||| |||||| |||| ||||||||    
T  13042988 gttggaaatcaagagtgagtgataatctcccacatcgactag-aaatagagcaaacattggatatataagagaggagacccataaacccatcatcttagg 13043086  T
Q  371 gttttgggtaagag 384  Q
     |||||||||||||    
T  13043087 attttgggtaagag 13043100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 384
Target Start/End: Original strand, 13112984 - 13113096
Alignment:
Q  271 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 370  Q
    |||||||||||||  |||||||| || || ||| |||||||  |||| ||| |||  ||| ||||| |||||| ||||| |||||| |||| ||||||||    
T  13112984 gttggaaatcaagagtgagtgataatctcccacatcgactag-aaatagagcaaacattggatatataagagaggagacccataaacccatcatcttagg 13113082  T
Q  371 gttttgggtaagag 384  Q
     |||||||||||||    
T  13113083 attttgggtaagag 13113096  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 35150069 - 35150114
Alignment:
Q  343 aagagactcataaatccattatcttagggttttgggtaagagtgtg 388  Q
    ||||||| |||||||||||| ||||| |||||||||||| ||||||    
T  35150069 aagagacccataaatccattgtcttaaggttttgggtaaaagtgtg 35150114  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 388
Target Start/End: Complemental strand, 36522323 - 36522287
Alignment:
Q  352 ataaatccattatcttagggttttgggtaagagtgtg 388  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  36522323 ataaacccattatcttaaggttttgggtaagagtgtg 36522287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 1127427 - 1127468
Alignment:
Q  347 gactcataaatccattatcttagggttttgggtaagagtgtg 388  Q
    |||||||||| |||||| |||| |||||||||||||||||||    
T  1127427 gactcataaacccattaccttaaggttttgggtaagagtgtg 1127468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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