View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17908_high_13 (Length: 205)
Name: NF17908_high_13
Description: NF17908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17908_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 4177630 - 4177824
Alignment:
| Q |
8 |
aagaatatcccaaaaaccagatcctaaagtaacaccaaagagagtaagatcttcatcataaatccatttcttcagctcatgatacgaacccgaaagagtt |
107 |
Q |
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| T |
4177630 |
aagaaaatcccaaaaaccagaccctaaagtaacaccaaagagtgtaagatcttcctcataaatccatttcttcagctcatgatacgaacccgaaagagtt |
4177729 |
T |
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| Q |
108 |
ggatcaagaacacactcaaccattggtgctaaacaaggatcactgcctctaacaagaagctctgaagcaacagtgagagcataagactcttcttc |
202 |
Q |
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| T |
4177730 |
ggatcaagaacacactcaaccattggtgctaaacaaagatcactacctctaacaagaagctctgaagcaacagtgagagcataagactcttcttc |
4177824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 4159973 - 4159801
Alignment:
| Q |
30 |
cctaaagtaacaccaaagagagtaagatcttcatcataaatccatttcttcagctcatgatacgaacccgaaagagttggatcaagaacacactcaacca |
129 |
Q |
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| T |
4159973 |
cctaaattgacagcaaatagagtgagatcttcctcataaacccatttctttaagttatgaaatgaagttgaaagtgttggatcaagaacacactcaacca |
4159874 |
T |
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| Q |
130 |
ttggtgctaaacaaggatcactgcctctaacaagaagctctgaagcaacagtgagagcataagactcttcttc |
202 |
Q |
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| T |
4159873 |
ttggagctaaacaaagttcagttcctttaacaagaagctctgaagcaacagtgagagcataagcttcttcttc |
4159801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 4172107 - 4172201
Alignment:
| Q |
108 |
ggatcaagaacacactcaaccattggtgctaaacaaggatcactgcctctaacaagaagctctgaagcaacagtgagagcataagactcttcttc |
202 |
Q |
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| T |
4172107 |
ggatcaagaacacactcaaccattggagctaaacaaagttcagtccctttaacaagaagctctgaagtaactgtgagagcataagcttcttcttc |
4172201 |
T |
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