View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17908_high_3 (Length: 383)
Name: NF17908_high_3
Description: NF17908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17908_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 68 - 366
Target Start/End: Complemental strand, 40811927 - 40811627
Alignment:
| Q |
68 |
taaaccaggtactcttgggagaaaatatagtgataatattagagaaaaatatgccctttcattgaaactgtatagcttactttgattattgatccaaatg |
167 |
Q |
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| T |
40811927 |
taaaccaggtactcttgggagaaaatatagtgataatattagagaaaaatatgccctttcattgaaactgtatagcttactttgattattgatccaaatg |
40811828 |
T |
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| Q |
168 |
gtcgaatcttatgtcttcatgtactgtatgtactatgtactacattcagcataaaattcatgtcattgtactcttgggagagattcatccacgtcattga |
267 |
Q |
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| T |
40811827 |
gtcgaatcttatgtcttcatgtactgtatgtactatgtactacattcagcataaaattcatgtcattgtactcttgggagagattcatccacgtcattga |
40811728 |
T |
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| Q |
268 |
taccatgtgtgtggctatgaagagtgaccaaagtgacttttacaagttcaattatcaaaaattgaaaaggatc---aagttccacacaccattattgatt |
364 |
Q |
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| T |
40811727 |
caccaagtgtgtggctatgaagagtgaccaaagtgacttttacaagttcaattatc-aaaattgaaaaggatcaagaagttccacacaccattattgatt |
40811629 |
T |
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| Q |
365 |
ag |
366 |
Q |
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| T |
40811628 |
ag |
40811627 |
T |
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