View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17908_high_9 (Length: 242)
Name: NF17908_high_9
Description: NF17908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17908_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 31077711 - 31077834
Alignment:
| Q |
18 |
ataataatatttgactcacatgaattggtttcctgcgatccttctctctgcttctctaacacattccaaaaccacaggctttccattgtcatcccgatat |
117 |
Q |
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| T |
31077711 |
ataataatatttgactcacatgaattggtttcctgcgatccttctctctgcttctctaacacattccaaaaccacaggctttccattgtcatcccgatat |
31077810 |
T |
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| Q |
118 |
gcaccctgttataattttcaaatc |
141 |
Q |
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| T |
31077811 |
gcaccctgttataattttcaaatc |
31077834 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 31069253 - 31069327
Alignment:
| Q |
27 |
tttgactcacatgaattggtttcctgcgatccttctctctgcttctctaacacattccaaaaccacaggctttcc |
101 |
Q |
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||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||| |||||||| |
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| T |
31069253 |
tttgactcacatgaattggtttcctgcaattctcctctcagcttctctaacacattccaaaaccactggctttcc |
31069327 |
T |
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