View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17908_low_13 (Length: 241)
Name: NF17908_low_13
Description: NF17908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17908_low_13 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 18875872 - 18875646
Alignment:
| Q |
15 |
aatcaaaagacactaattcgtaaaattaattacaaagatacagtatttacaacatttttatggtaaataaattttttcataccgagtactcctttgcctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18875872 |
aatcaaaagacactaattcgtaaaattaattacaaagatacagtatttacaacatttttatggtaaataaattttttcataccgagtactcctttgcctt |
18875773 |
T |
|
| Q |
115 |
tatgttgtcttgttattgttgtaattctgcagaaatacagaagtcacagtctcaaatccaacaacttcttcacataggactgtcacagagcctaaaatca |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18875772 |
tatgttgtcttgttattgttgaaattctgcagaaatacagaagtcacagtctcaaatccaacaacttcttcacataggactgtcacagagcctaaaatca |
18875673 |
T |
|
| Q |
215 |
tcgtgcaaactaccagtgaagttgatc |
241 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
18875672 |
tcgtgcaaactaccagtgaagttgatc |
18875646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University