View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17908_low_16 (Length: 223)
Name: NF17908_low_16
Description: NF17908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17908_low_16 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
|
| [»] scaffold1043 (1 HSPs) |
| | |
|
| [»] scaffold0061 (2 HSPs) |
| | |
|
| [»] scaffold0364 (1 HSPs) |
| | |
|
| [»] scaffold0290 (1 HSPs) |
| | |
|
| [»] scaffold0118 (1 HSPs) |
| | |
|
| [»] scaffold0385 (1 HSPs) |
| | |
|
| [»] scaffold0207 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0010 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 143315 - 143102
Alignment:
| Q |
1 |
tgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
100 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143315 |
tgatgtcattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
143216 |
T |
|
| Q |
101 |
taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgatt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143215 |
taagggggtgaatcttttcactttatggtatcttaatctatgatgggaaggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgatg |
143116 |
T |
|
| Q |
201 |
atagaatgatgatg |
214 |
Q |
| |
|
| ||| |||||||| |
|
|
| T |
143115 |
agagattgatgatg |
143102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 16067959 - 16068172
Alignment:
| Q |
1 |
tgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||| ||||||||||| ||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
16067959 |
tgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacaaggggataaattagatg |
16068058 |
T |
|
| Q |
101 |
taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgatt |
200 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16068059 |
taagggggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatg |
16068158 |
T |
|
| Q |
201 |
atagaatgatgatg |
214 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
16068159 |
agaaaatgatgatg |
16068172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 9692989 - 9693088
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||| || |||||||||||||||||||||| | |||||| |||||||||| ||| |||||| |
|
|
| T |
9692989 |
gtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagtttgat |
9693088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 15197 - 14984
Alignment:
| Q |
1 |
tgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| | || ||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15197 |
tgatgttattctttagatgacaagtagtgatggttccagcttatgttgaagatgacactcttaaggagtatcttaggccaacgaggggatagattagatg |
15098 |
T |
|
| Q |
101 |
taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgatt |
200 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15097 |
taagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttatg |
14998 |
T |
|
| Q |
201 |
atagaatgatgatg |
214 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
14997 |
agagaatgatgatg |
14984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 14746762 - 14746549
Alignment:
| Q |
1 |
tgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| | || ||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14746762 |
tgatgttattctttagatgacaagtagtgatggttccagcttatgttgaagatgacactcttaaggagtatcttaggccaacgaggggatagattagatg |
14746663 |
T |
|
| Q |
101 |
taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgatt |
200 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14746662 |
taagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttatg |
14746563 |
T |
|
| Q |
201 |
atagaatgatgatg |
214 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
14746562 |
agagaatgatgatg |
14746549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 22395360 - 22395516
Alignment:
| Q |
1 |
tgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| | |||||||| ||||| |||||| ||||||||||||| ||| ||||| ||| |||| |
|
|
| T |
22395360 |
tgatgttattctttagatgacaagtagtgatggttccagcttatgttgtagatgccgctcataaggaatatcttaggccaatgaggggataaattggatg |
22395459 |
T |
|
| Q |
101 |
taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtct |
157 |
Q |
| |
|
|||||||| || ||||||||||||| ||||||||||| || || |||||||||||| |
|
|
| T |
22395460 |
taagggggagagtctttgcactttagggtatcttaatatatgatgggagggttgtct |
22395516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 19545145 - 19545254
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||| || | |||||||||| |||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
19545145 |
gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttataatgtgaattttgat |
19545239 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
19545240 |
gagaaaatgatgatg |
19545254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 25792040 - 25791827
Alignment:
| Q |
1 |
tgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||| | |||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||| | |||||||| |
|
|
| T |
25792040 |
tgattttattctttagatgacaagtagtggtggttcgagcttatactgtagatgacgctcttaaggagtatcttaggtcaacgaggggacaaattagatg |
25791941 |
T |
|
| Q |
101 |
taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgatt |
200 |
Q |
| |
|
|||| ||| ||||||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25791940 |
taagagggagaatctttgaactttagggtatcttaatctatgacaggagggttttcttaaattttaaaatgttgttactgttatgatgtgaactttgatg |
25791841 |
T |
|
| Q |
201 |
atagaatgatgatg |
214 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
25791840 |
agagaatgatgatg |
25791827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 25756204 - 25756355
Alignment:
| Q |
1 |
tgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||| | |||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||| | |||||||| |
|
|
| T |
25756204 |
tgattttattctttagatgacaagtagtggtggttcgagcttatactgtagatgacgctcttaaggagtatcttaggtcaacgaggggacatattagatg |
25756303 |
T |
|
| Q |
101 |
taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggt |
152 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
25756304 |
taagagggagaatctttgcactttagggtatcttaatctatgacaggagggt |
25756355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 19020370 - 19020257
Alignment:
| Q |
1 |
tgatgttattctttagatgacat-gtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagat |
99 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||| ||| | ||| |||| |||||||||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
19020370 |
tgatgttattatttagatgacaaagtagtgatggttccaacttgggttgttgatggcgctcttaaggagtatcttaggccaatga--ggagagattagat |
19020273 |
T |
|
| Q |
100 |
gtaagggggtgaatct |
115 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
19020272 |
gtaagggggagaatct |
19020257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 32948924 - 32948837
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatg |
188 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| ||||| || ||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
32948924 |
gtaagggggagaatctttgcactttagagtatctaaatctt-gatgggagggttgtctttaattttaatatgttgttgctgttatgatg |
32948837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 14138017 - 14137964
Alignment:
| Q |
146 |
ggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
14138017 |
ggagggttgtcttaaatcttaatatgttgttgttgttatgctgtgaattttgat |
14137964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 23909234 - 23909181
Alignment:
| Q |
146 |
ggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||||||| |||||||||| |
|
|
| T |
23909234 |
ggagggttgtcttaaattttaataagttgttgttgttatgatgagaattttgat |
23909181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1043 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: scaffold1043
Description:
Target: scaffold1043; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 417 - 631
Alignment:
| Q |
1 |
tgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| |||||||||| | |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
417 |
tgatgttattctttagatgacaagtagggatgattccagcttatgttgtagatgacactcttaaggagtatcttaggccaacgaggggatagattagatg |
516 |
T |
|
| Q |
101 |
taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaa-ttttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
|||||||| ||||||||||| | || ||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||||| || |
|
|
| T |
517 |
taagggggagaatctttgcaatgtagagtatcttaatctatgatgagagggttgtcttaaatttttaaaatgttgttactgttatgatatgaatttttat |
616 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
617 |
gagagaatgatgatg |
631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 16566 - 16680
Alignment:
| Q |
1 |
tgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16566 |
tgatgttattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
16665 |
T |
|
| Q |
101 |
taagggggtgaatct |
115 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
16666 |
taagggggagaatct |
16680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 25624 - 25738
Alignment:
| Q |
1 |
tgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25624 |
tgatgttattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagatg |
25723 |
T |
|
| Q |
101 |
taagggggtgaatct |
115 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
25724 |
taagggggagaatct |
25738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 17419689 - 17419480
Alignment:
| Q |
1 |
tgatgttattctttagatgacatg-tagtgattgttccagcttacgatgtagatgacgctcttaaggagtatcttaggccaacgagtggatagattagat |
99 |
Q |
| |
|
||||||||||||||| |||||| | ||||||| ||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17419689 |
tgatgttattctttatatgacaaggtagtgatggttccagtttatgttgtagatggtactcttaaggagtatcttaggccaacgagtggatagat----- |
17419595 |
T |
|
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| || | || |||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17419594 |
gtaaggggaagaatctttgcactttagggtatcttaatctatgaaggaagatttgttttaaattttaaaatgttgttactattatgatgtgaattttgat |
17419495 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
17419494 |
gagagaatgatgatg |
17419480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 19727534 - 19727647
Alignment:
| Q |
101 |
taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgatt |
200 |
Q |
| |
|
||||| || |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19727534 |
taaggcggagaatctttgcactttagggtatcttaatctatgacgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgacg |
19727633 |
T |
|
| Q |
201 |
atagaatgatgatg |
214 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
19727634 |
agagaatgatgatg |
19727647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 12230930 - 12230807
Alignment:
| Q |
91 |
agattagatgtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtg |
190 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
12230930 |
agattcgaggtaagggggataatctttgcactttagggtatcttaatctattatgggagggttgtcttaaattttaatatgttgttgctattatgatgtg |
12230831 |
T |
|
| Q |
191 |
aattttgattatagaatgatgatg |
214 |
Q |
| |
|
||||||||| | |||||||||||| |
|
|
| T |
12230830 |
aattttgatgagagaatgatgatg |
12230807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 13268132 - 13268018
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| || || |||||||| ||||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
13268132 |
gtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgac |
13268033 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
13268032 |
gagagaatgatgatg |
13268018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 18554721 - 18554830
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||| || | |||||||||| |||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
18554721 |
gtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttatgatgtgaattttgat |
18554815 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
18554816 |
gagaaaatgatgatg |
18554830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 13559366 - 13559465
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||| || |||||||||||||||||||||| | |||||| |||||||||| ||| |||||| |
|
|
| T |
13559366 |
gtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagtttgat |
13559465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 15870947 - 15871061
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| || || |||||||||||||||||||||| | || |||||||||||| ||||||||| |
|
|
| T |
15870947 |
gtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaatgcactttttctgttatgatgtaaattttgat |
15871046 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
15871047 |
gagtgaatgatgatg |
15871061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19727473 - 19727538
Alignment:
| Q |
1 |
tgatgttattctttagatgacatgtagtgattgttccagcttacgatgtagatgacgctcttaagg |
66 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||| | |||||||||| ||||||||| |
|
|
| T |
19727473 |
tgatgttattctttagatgacaagtagtgactgttccaacttatgttgtagatgacactcttaagg |
19727538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 15888522 - 15888589
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaa |
167 |
Q |
| |
|
||||| ||| |||||||||||||||| | ||||| ||| || || |||||||||||||||||||||| |
|
|
| T |
15888522 |
gtaagagggagaatctttgcactttaggatatctaaatttatgatgggagggttgtcttaaattttaa |
15888589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 13235284 - 13235248
Alignment:
| Q |
162 |
ttttaaaatgttgttactgttatgatgtgaattttga |
198 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
13235284 |
ttttaatatgttgttagtgttatgatgtgaattttga |
13235248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 29718097 - 29718211
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||||| || | |||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
29718097 |
gtaagggggagaatatttgcactttagagtatcttaatctatgatggaagggttgtcttaaattttaatatgttgttgttgttatgatgtgaattttgat |
29718196 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
29718197 |
gagagaatgatgatg |
29718211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 18985275 - 18985350
Alignment:
| Q |
101 |
taagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgtt |
176 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||| ||||||| || ||||||||||| ||||||||||| |||||||| |
|
|
| T |
18985275 |
taagggggagaatctttgcacattagggtatcgtaatctatgataggagggttgtattaaattttaatatgttgtt |
18985350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 26861212 - 26861307
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattt |
195 |
Q |
| |
|
||||||||| || ||||||||||||| |||||||||||| | || | |||||||| ||||||||||| || || || |||||||| ||| ||||| |
|
|
| T |
26861212 |
gtaagggggagattctttgcactttagggtatcttaatccatgatggaagggttgtattaaattttaatatattattgctgttatggtgttaattt |
26861307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 21977218 - 21977104
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| || || | |||||||||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
21977218 |
gtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttgat |
21977119 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
21977118 |
gagtgaatgatgatg |
21977104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 21999649 - 21999535
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| || || | |||||||||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
21999649 |
gtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttgat |
21999550 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
21999549 |
gagtgaatgatgatg |
21999535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 19186895 - 19186781
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||| || || || |||| |||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
19186895 |
gtaaggaggagaatctttgcactttagggtatcttaatttatgatgggtgggtcgtcttaaattttaatacattgttgctgttatgatgtgaattttgat |
19186796 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
19186795 |
cagtgaatgatgatg |
19186781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 10302828 - 10302744
Alignment:
| Q |
104 |
gggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatg |
188 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| || |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
10302828 |
gggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatg |
10302744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 22161844 - 22161732
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| || || | ||||||||||||||||| || | ||||| |||||||||||||||||||||| |
|
|
| T |
22161844 |
gtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaatttgaatacattgttgctgttatgatgtgaattttgat |
22161745 |
T |
|
| Q |
200 |
tatagaatgatga |
212 |
Q |
| |
|
| ||||||||| |
|
|
| T |
22161744 |
gagtgaatgatga |
22161732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 10341169 - 10341070
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
||||||||| |||| ||||||||||| |||||||||||||| | ||||| |||||||||||||||| | |||||| |||||||||| |||||||||| |
|
|
| T |
10341169 |
gtaagggggagaatatttgcactttagggtatcttaatctatggtgggaggattgtcttaaattttaataagttgttgatgttatgatgagaattttgat |
10341070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 16357825 - 16357886
Alignment:
| Q |
105 |
ggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaa |
167 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| || || ||| |||||||||||||||||| |
|
|
| T |
16357825 |
ggggagaatctttgcactttagggtatcttaatttatgatggga-ggttgtcttaaattttaa |
16357886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0364 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0364
Description:
Target: scaffold0364; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 14676 - 14588
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatg |
188 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
14676 |
gtaagggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtctttaatttcaatatgttgttgctgttatgatg |
14588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 11838 - 11934
Alignment:
| Q |
103 |
agggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
|||||| |||||||||||||||| ||| || |||| || || ||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
11838 |
agggggagaatctttgcactttagggtgtcgtaatttatgataggagggttgtattaaattttaatatgttgttgctgttatgatgtaaattttgat |
11934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 110 - 214
Target Start/End: Complemental strand, 12059 - 11955
Alignment:
| Q |
110 |
gaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgattatagaatga |
209 |
Q |
| |
|
|||| ||||||||||| ||||||||||| || || |||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
12059 |
gaatatttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaattcattgttgctgttatgatgtgaattttgatgagagaatga |
11960 |
T |
|
| Q |
210 |
tgatg |
214 |
Q |
| |
|
||||| |
|
|
| T |
11959 |
tgatg |
11955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0385 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0385
Description:
Target: scaffold0385; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 16258 - 16144
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||||||| || || ||||||| |||||||||||||| | ||||| || ||||||||||||||||||| |
|
|
| T |
16258 |
gtaagggggagaatctttgtactttagggtatcttaatttatgatgggagggtcgtcttaaattttaatacattgttgcttttatgatgtgaattttgat |
16159 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
16158 |
gagtgaatgatgatg |
16144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 10454072 - 10454186
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||||||| || || |||||||| || ||||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
10454072 |
gtaaggggaagaatctttgaactttagggtatcttaatctatgatgggtgggttgtcctatattttaatatgtttttgctgttatggtgtgaattttgat |
10454171 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
10454172 |
gagagaatgatgatg |
10454186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 17861384 - 17861441
Alignment:
| Q |
154 |
gtcttaaattttaaaatgttgttactgttatgatgtgaattttgattatagaatgatg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| |
|
|
| T |
17861384 |
gtcttaaattttaaaatgttgttactgttatgacgtgaattttgatgagagaatgatg |
17861441 |
T |
|
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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 1683281 - 1683229
Alignment:
| Q |
162 |
ttttaaaatgttgttactgttatgatgtgaattttgattatagaatgatgatg |
214 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||| | ||| |||||||| |
|
|
| T |
1683281 |
ttttaatatgttgttgcggttatgatgtgaattttgatgagagactgatgatg |
1683229 |
T |
|
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 21496675 - 21496562
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat |
199 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||| | |||||||| |||||||||| || |||||||| || |||||| ||||| || || |
|
|
| T |
21496675 |
gtaagggggagaatctttgcactttagggtatcttaatctatg-tgggagggttatcttaaatttaaatatgttgtttctaatatgatatgaatatttat |
21496577 |
T |
|
| Q |
200 |
tatagaatgatgatg |
214 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
21496576 |
gagagaatgatgatg |
21496562 |
T |
|
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Target: scaffold0207 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0207
Description:
Target: scaffold0207; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 739 - 827
Alignment:
| Q |
100 |
gtaagggggtgaatctttgcactttatggtatcttaatctacgacaggagggttgtcttaaattttaa-aatgttgttactgttatgatg |
188 |
Q |
| |
|
||||||||| ||| |||||||||||| |||||||||||||| || ||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
739 |
gtaagggggagaa-ctttgcactttagggtatcttaatctatgattggagggttgtctttaattttaattatgttgttgctgttatgatg |
827 |
T |
|
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