View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17908_low_2 (Length: 561)
Name: NF17908_low_2
Description: NF17908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17908_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 28436815 - 28437358
Alignment:
| Q |
1 |
gcatcaagaaggagtgccagcggttcatctactcctgtctttaatgtggaggaaagtgggggtggcgcaaagccacggtaattttttcttcctggacacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28436815 |
gcatcaagaaggagtgccagcggttcatctactcctgtctttaatgtggaggaaagtgggggtggcgcaaagccacggtaattttttcttcctggacacg |
28436914 |
T |
|
| Q |
101 |
tcaagatagtaatgaaatgacctgaatattttagtttttgggattttacagtagatatgttgatttcttttgttgcttgttctcttgcatcataatatga |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28436915 |
tcaagatagtaatgaaatgaccttaatattttagtttttgggattttacagtagatatgttgatttcttttgttgcttgttctcttgcatcataatatga |
28437014 |
T |
|
| Q |
201 |
tgcttttttcattggagatagattgaacactaatagcaggaattacgatttagttttagttttaccccatcttttatctgtaaagtattttaacctggat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28437015 |
tgcttttttcattggagatagattgaacactaatagcaggaattacgatttagttttagttttaccccatcttttatctgtaaagtattttaacctggat |
28437114 |
T |
|
| Q |
301 |
gtgtaataaaactgaacaaattgtaaaaactgttcttatatgttggaggtgaaagtgattgaaaacaaaaacatcatgtttggcaaactcttgctccatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28437115 |
gtgtaataaaactgaacaaattgtaaaaactgttcttatatgttggaggtgaaagtgattgaaaacaaaaacatcatgttaggcaaactcttgctccatt |
28437214 |
T |
|
| Q |
401 |
agtttttcttatcctgtgttctgaaatctaaatttatgttgcagattttttgagtgtaccacaatacctttttgggtacttcgtaattcaccgcacgaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28437215 |
agtttttcttatcctgtgttctgaaatctaaatttatgttgcagattttttgagtgtaccacaatacctttttgggtacttcgtaattcaccgcacgaaa |
28437314 |
T |
|
| Q |
501 |
gaccaaaatacacctgcatttctgctatgaaagtgactttcatc |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28437315 |
gaccaaaatacacctgcatttctgctatgaaagtgactttcatc |
28437358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University