View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17908_low_5 (Length: 370)
Name: NF17908_low_5
Description: NF17908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17908_low_5 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 34 - 360
Target Start/End: Original strand, 6242780 - 6243074
Alignment:
| Q |
34 |
cagcttcacatcaatagtttccttccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgactattg |
133 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
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| T |
6242780 |
cagcttcacatcaatagtttccttccatacatgatggtaattcttttacttggaagtgttatttcaattttagcatt----------tcgccgacaattg |
6242869 |
T |
|
| Q |
134 |
cttggatttatttgggtttctggttcttaatctttgctttgatgttctataagaatcgaaaagaactctttcaatggattccaaaaaggatcaagagtgt |
233 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6242870 |
cttggatttatttgggtttgtggatcttaatctttgctttgatgttctataagaatcgaaaagaactctttcaatggattccaaaaaggatcaagaatgt |
6242969 |
T |
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| Q |
234 |
tattaatggtcaaagtagcaatgacaatggtatgtcatctcacaatttagagatgtctggagttgaatcgctacctgtctagagcaattgtttgcatttt |
333 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
6242970 |
tattaat----------------------gtatgtcatctcacaatttagagatgtctggagttgaatcacttcctgtctagagcaattgtttgcatttt |
6243047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 6325896 - 6325705
Alignment:
| Q |
38 |
ttcacatcaatagtttccttccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgactattgcttg |
137 |
Q |
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|||||||||| || ||| |||| | || |||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| || |
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| T |
6325896 |
ttcacatcaagagattcattccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatg |
6325797 |
T |
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| Q |
138 |
gatttatttgggtttctggttcttaatctttgctttgatgttctataagaatcgaaaagaactctttcaatggattccaaaaaggatcaaga |
229 |
Q |
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| T |
6325796 |
gatttatttgggtttttggatctttatctttgctttgatgtgctataagagtaaaaatgaactctatcaatggattccagaaaggatcaaga |
6325705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 34 - 234
Target Start/End: Complemental strand, 6346494 - 6346294
Alignment:
| Q |
34 |
cagcttcacatcaatagtttccttccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgactattg |
133 |
Q |
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|||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||| || |||| |||||| | ||||| || || |||| |
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| T |
6346494 |
cagcttcacatcaagaacttccttccattcatgatggttattgttttacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattg |
6346395 |
T |
|
| Q |
134 |
cttggatttatttgggtttctggttcttaatctttgctttgatgttctataagaatcgaaaagaactctttcaatggattccaaaaaggatcaagagtgt |
233 |
Q |
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||||||||| |||||| || ||| ||||| ||||||||||||||| |||| ||||| ||||||||||| |||| ||||||| |||||||||||| ||| |
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| T |
6346394 |
cttggatttttttgggcttgtggatcttactctttgctttgatgtgctatgagaataaaaaagaactctatcaaatgattccacaaaggatcaagaatgt |
6346295 |
T |
|
| Q |
234 |
t |
234 |
Q |
| |
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| |
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| T |
6346294 |
t |
6346294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 6333373 - 6333182
Alignment:
| Q |
38 |
ttcacatcaatagtttccttccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgactattgcttg |
137 |
Q |
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|||||||||| |||||| |||| | || |||| | ||||||||||||||||||||||||||| ||||||| |||||| | ||||| || || |||||||| |
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| T |
6333373 |
ttcacatcaagagtttctttccttccaagatgatcattcttttacttggaagtgttgtttcagttttagctttgatgataatttctcctacaattgcttg |
6333274 |
T |
|
| Q |
138 |
gatttatttgggtttctggttcttaatctttgctttgatgttctataagaatcgaaaagaactctttcaatggattccaaaaaggatcaaga |
229 |
Q |
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||||||||||||||| | | |||| |||||||||||||||| |||||||| | ||| ||| ||| ||||| ||||||| |||||||||||| |
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| T |
6333273 |
gatttatttgggtttgttgatcttcatctttgctttgatgtgctataagagtaaaaatgaaatctatcaattgattccagaaaggatcaaga |
6333182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 6219620 - 6219814
Alignment:
| Q |
38 |
ttcacatcaatagtttccttccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgactattgcttg |
137 |
Q |
| |
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|||||||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||| || |||| |||||| | ||||| || || |||||||| |
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| T |
6219620 |
ttcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttg |
6219719 |
T |
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| Q |
138 |
gatttatttgggtttctggttcttaatctttgctttgatgttctataagaatcgaaaagaactctttca---atggattccaaaaaggatcaaga |
229 |
Q |
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| T |
6219720 |
gatttttttgtgcttgtggatcttactcttttctttgatgtgctatgagaatcgaaaagagctctatcaaatattgattccagaaaggatcaaga |
6219814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 6219151 - 6219297
Alignment:
| Q |
83 |
ttggaagtgttgtttcaattttagcattgatggttatttcgccgactattgcttggatttatttgggtttctggttcttaatctttgctttgatgttcta |
182 |
Q |
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||||||||||||||| |||||||| |||||| |||||| || || |||||||||||| |||| || | | | ||||||| ||| |||||||| ||| |
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| T |
6219151 |
ttggaagtgttgtttttattttagctttgatgaatatttcccctaccattgcttggattgatttcgggctgttgatcttaatattttctttgatgggcta |
6219250 |
T |
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| Q |
183 |
taagaatcgaaaagaactctttcaatggattccaaaaaggatcaaga |
229 |
Q |
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||| |||||||||||||||| |||| |||||| |||||||||||| |
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| T |
6219251 |
taaaaatcgaaaagaactctatcaaatgattccccaaaggatcaaga |
6219297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 971 - 1106
Alignment:
| Q |
17 |
actacctagctttggtgcagcttcacatcaatagtttccttccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
971 |
actacctagctttggtgcagcttcacatcaatagtttcctcccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggt |
1070 |
T |
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| Q |
117 |
tatttcgccgactattgcttggatttatttgggttt |
152 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
1071 |
tatttcgccgacaattgcttggatttatttgggttt |
1106 |
T |
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