View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17908_low_6 (Length: 370)
Name: NF17908_low_6
Description: NF17908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17908_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 29616726 - 29616976
Alignment:
| Q |
14 |
gtttcaatacacaaaaccaatcgatatcatatgtcgactttgaggtttcagctcacgacagaggaaacgaaagaggaaattgattttgcgatttcagtac |
113 |
Q |
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| T |
29616726 |
gtttcaatacacaaaaccaatcgatatcatatgtcgactttgaggtttgag--------agaggaaacgaaagaggaaattgattttgcgatttcagtac |
29616817 |
T |
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| Q |
114 |
actaatgaagaagaactagaacaaaactcgcgatttcgggtttcaacaatagaggaatgc--------gattttggggttgaagaagaactggaaacaga |
205 |
Q |
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| T |
29616818 |
actaatgaagaagaactagaacacaactcgcgatttcgggtttcaacaatagaggaatgcgattttcggattttggggttgaagaataactggaaacaga |
29616917 |
T |
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| Q |
206 |
taggaccttggttatgagaagagccaccatcaactatgtaaataattggaatgcttctcatg |
267 |
Q |
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| T |
29616918 |
taggaccttggttatgagaagag---ccatcaactatgtaaataattggaacgcttctcatg |
29616976 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 29042841 - 29042916
Alignment:
| Q |
295 |
caagttcttcttcttattgcaaataaaacgcatctaagacggtgacaatacatgaagcgccattgctatgaccatt |
370 |
Q |
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| T |
29042841 |
caagttcttcatctttttgcaaagaaaactcatctaagtcggtgacaattgttgaagttccattgctatgaccatt |
29042916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 48711586 - 48711689
Alignment:
| Q |
77 |
gaaacgaaagaggaaattgattttgcgatttcagtacactaatgaagaagaactagaacaaaactcgcgatttcgggtttcaacaatagaggaatgcgat |
176 |
Q |
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| T |
48711586 |
gaaacgaaagaggaaatcaattttgcagtttcagtacaagaatgaagcagaactgaaacaagatttgcgatttacggtttcaacaacagaggaaaacgat |
48711685 |
T |
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| Q |
177 |
tttg |
180 |
Q |
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|||| |
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| T |
48711686 |
tttg |
48711689 |
T |
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