View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17909_high_11 (Length: 429)
Name: NF17909_high_11
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 40846681 - 40846279
Alignment:
| Q |
12 |
aagctgttggatataattattacacagtctagattacaacttcttcaaaccattgactttatttttataagcataatctttattgaaagagactaaacta |
111 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40846681 |
aagctgttggata--attattaca--gtctagattacaacttcttcaaaccattgactttatttttataagcataatttttattgaaagagactaaacta |
40846586 |
T |
|
| Q |
112 |
gaacaagatgtgcaaagtagctctaagaccatcatacagttcaatgtgaagacagtgccttcctcaacactaacacgagaaataccctgcaacatataac |
211 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40846585 |
gcacaagatgtgcaaagtagctctaagaccatcacacagttcaatgtgaagacagtgccttcctcaacactaacacgagaaataccctgcaacatataac |
40846486 |
T |
|
| Q |
212 |
agatttccataatgcatcttcaaagaactttaaattgaggttgttacactccatcaaatacaccgcattgttaaacaaattaaatgagacactttcacta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |
|
|
| T |
40846485 |
agatttccataatgcatcttcaaagaactttaaattgaggttgttacactccatcaaatacaccgcatcgttaaccaaattaaatgagacactttcatta |
40846386 |
T |
|
| Q |
312 |
gaaccttggaatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatggttgaattttctttg |
411 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40846385 |
gaaccttgggatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatggttgaattttctttg |
40846286 |
T |
|
| Q |
412 |
attcctt |
418 |
Q |
| |
|
||||||| |
|
|
| T |
40846285 |
attcctt |
40846279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 304 - 396
Target Start/End: Original strand, 4890548 - 4890640
Alignment:
| Q |
304 |
tttcactagaaccttggaatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatg |
396 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
4890548 |
tttcactggaatcttggaatcatcgccaaatgagacattgccacacactgattcatcaagctctacaaacatgctccttttcccacacatatg |
4890640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 34646063 - 34645979
Alignment:
| Q |
316 |
cttggaatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatggttg |
400 |
Q |
| |
|
||||||||| ||| ||||||||||| | ||||||| |||||||||||| | || ||||| ||||| ||| |||||||||||||| |
|
|
| T |
34646063 |
cttggaatcgtcgacaaatgagacaattccacttaatgattcatcaagttttacgaacatgctcctatttccacacatatggttg |
34645979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 368
Target Start/End: Original strand, 21745757 - 21745796
Alignment:
| Q |
329 |
ccaaatgagacattgccacttactgattcatcaagctcca |
368 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
21745757 |
ccaaatgagacattgtcacttactgattcatcaagatcca |
21745796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University