View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17909_high_12 (Length: 428)

Name: NF17909_high_12
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17909_high_12
NF17909_high_12
[»] chr3 (28 HSPs)
chr3 (226-395)||(26247477-26247645)
chr3 (33-164)||(54122164-54122295)
chr3 (54-164)||(54845477-54845587)
chr3 (27-157)||(2868617-2868747)
chr3 (48-164)||(43639471-43639587)
chr3 (16-164)||(53876359-53876507)
chr3 (43-164)||(32023050-32023172)
chr3 (47-164)||(9017837-9017954)
chr3 (35-164)||(10855030-10855159)
chr3 (47-164)||(33994693-33994810)
chr3 (27-164)||(36097589-36097726)
chr3 (47-164)||(39866507-39866624)
chr3 (47-164)||(48744295-48744413)
chr3 (27-164)||(17776928-17777065)
chr3 (27-164)||(19078229-19078366)
chr3 (47-164)||(32827258-32827375)
chr3 (26-102)||(22202300-22202376)
chr3 (37-164)||(54458252-54458380)
chr3 (27-102)||(27152959-27153034)
chr3 (50-164)||(26134660-26134774)
chr3 (21-102)||(14756042-14756123)
chr3 (305-401)||(26250375-26250468)
chr3 (51-102)||(17274779-17274830)
chr3 (47-102)||(41031673-41031728)
chr3 (134-164)||(30261542-30261572)
chr3 (38-79)||(11529021-11529062)
chr3 (38-119)||(49408590-49408671)
chr3 (248-284)||(37041948-37041984)
[»] chr4 (43 HSPs)
chr4 (34-164)||(17237079-17237209)
chr4 (45-164)||(39979816-39979935)
chr4 (20-165)||(28974341-28974486)
chr4 (47-164)||(1825200-1825319)
chr4 (16-164)||(22872309-22872459)
chr4 (38-164)||(18849704-18849830)
chr4 (45-164)||(54729432-54729555)
chr4 (27-164)||(4360342-4360479)
chr4 (16-164)||(49448877-49449023)
chr4 (27-164)||(38160086-38160223)
chr4 (43-164)||(3686047-3686170)
chr4 (16-164)||(50714618-50714766)
chr4 (25-164)||(43334955-43335094)
chr4 (21-102)||(21240991-21241073)
chr4 (50-164)||(42024158-42024272)
chr4 (21-66)||(14784843-14784888)
chr4 (309-346)||(25250733-25250770)
chr4 (35-164)||(41203773-41203902)
chr4 (27-102)||(8295127-8295202)
chr4 (29-68)||(14452065-14452104)
chr4 (33-164)||(16493238-16493367)
chr4 (27-102)||(41371226-41371301)
chr4 (35-102)||(45290134-45290201)
chr4 (134-164)||(25149487-25149517)
chr4 (47-161)||(31862828-31862942)
chr4 (27-69)||(39258204-39258246)
chr4 (87-157)||(40881186-40881256)
chr4 (295-344)||(43335146-43335196)
chr4 (309-347)||(50328215-50328253)
chr4 (255-284)||(4354444-4354473)
chr4 (26-119)||(4357648-4357741)
chr4 (295-347)||(4727447-4727500)
chr4 (135-164)||(38977027-38977056)
chr4 (16-69)||(40020868-40020921)
chr4 (135-164)||(48740556-48740585)
chr4 (295-347)||(51076534-51076587)
chr4 (295-347)||(51572350-51572403)
chr4 (39-119)||(2906744-2906824)
chr4 (47-100)||(4354548-4354603)
chr4 (25-69)||(27790353-27790397)
chr4 (27-119)||(30568744-30568836)
chr4 (16-68)||(35027420-35027472)
chr4 (48-164)||(41436517-41436633)
[»] chr5 (32 HSPs)
chr5 (27-164)||(33988236-33988373)
chr5 (47-164)||(11099432-11099549)
chr5 (38-164)||(35585562-35585688)
chr5 (33-164)||(35646030-35646161)
chr5 (22-164)||(39183557-39183699)
chr5 (27-164)||(16283522-16283659)
chr5 (47-102)||(41184758-41184813)
chr5 (26-164)||(35334460-35334598)
chr5 (47-160)||(3725226-3725339)
chr5 (47-164)||(6610873-6610990)
chr5 (48-161)||(8692774-8692887)
chr5 (19-164)||(36446615-36446759)
chr5 (19-164)||(36469021-36469166)
chr5 (57-164)||(20189928-20190036)
chr5 (27-94)||(15814748-15814815)
chr5 (45-164)||(25814400-25814519)
chr5 (33-164)||(42575579-42575710)
chr5 (33-102)||(858433-858502)
chr5 (15-164)||(13135789-13135928)
chr5 (47-99)||(13422313-13422365)
chr5 (47-119)||(41594802-41594874)
chr5 (26-164)||(24231046-24231181)
chr5 (254-284)||(6173062-6173092)
chr5 (38-100)||(30437685-30437747)
chr5 (309-347)||(31956660-31956698)
chr5 (38-100)||(39060368-39060430)
chr5 (295-347)||(36446801-36446854)
chr5 (295-347)||(36469222-36469275)
chr5 (25-102)||(42211427-42211504)
chr5 (47-163)||(4576365-4576480)
chr5 (48-164)||(15254801-15254917)
chr5 (252-284)||(17699329-17699361)
[»] chr6 (15 HSPs)
chr6 (44-164)||(31265815-31265935)
chr6 (45-164)||(7301034-7301151)
chr6 (17-164)||(14312572-14312719)
chr6 (27-164)||(7739452-7739589)
chr6 (47-164)||(15081459-15081576)
chr6 (43-164)||(30063899-30064020)
chr6 (28-164)||(33921404-33921540)
chr6 (47-102)||(9755101-9755156)
chr6 (27-161)||(14306175-14306309)
chr6 (47-164)||(3604554-3604671)
chr6 (16-73)||(24552237-24552294)
chr6 (35-164)||(34915753-34915884)
chr6 (89-164)||(31723530-31723605)
chr6 (255-284)||(34803789-34803818)
chr6 (27-79)||(117987-118038)
[»] chr7 (20 HSPs)
chr7 (27-164)||(37490552-37490689)
chr7 (47-164)||(5724662-5724778)
chr7 (47-163)||(47454041-47454157)
chr7 (27-145)||(27234558-27234675)
chr7 (47-164)||(2849291-2849408)
chr7 (16-119)||(45890781-45890884)
chr7 (47-161)||(23058858-23058971)
chr7 (47-164)||(31581399-31581514)
chr7 (59-164)||(2842018-2842123)
chr7 (25-86)||(31394452-31394513)
chr7 (33-164)||(7425817-7425949)
chr7 (27-159)||(11616603-11616734)
chr7 (27-93)||(23186084-23186150)
chr7 (47-164)||(29434535-29434651)
chr7 (28-163)||(31549557-31549692)
chr7 (47-102)||(48981754-48981809)
chr7 (34-164)||(34001802-34001930)
chr7 (135-164)||(21387522-21387551)
chr7 (135-164)||(49100544-49100573)
chr7 (47-107)||(37157251-37157311)
[»] chr1 (31 HSPs)
chr1 (47-164)||(32587801-32587918)
chr1 (16-164)||(5442376-5442525)
chr1 (27-164)||(7785206-7785346)
chr1 (47-164)||(34813953-34814070)
chr1 (27-164)||(42926170-42926307)
chr1 (25-94)||(46880521-46880590)
chr1 (47-164)||(50267393-50267510)
chr1 (47-159)||(6787288-6787400)
chr1 (16-164)||(27391383-27391531)
chr1 (28-162)||(16040115-16040249)
chr1 (16-85)||(28908204-28908273)
chr1 (52-164)||(46496054-46496164)
chr1 (27-164)||(17342864-17343007)
chr1 (16-67)||(24234902-24234953)
chr1 (35-102)||(49945030-49945097)
chr1 (28-162)||(4466090-4466224)
chr1 (28-162)||(11425805-11425939)
chr1 (50-164)||(28839375-28839489)
chr1 (27-164)||(5040510-5040647)
chr1 (47-164)||(36467150-36467267)
chr1 (47-164)||(49494118-49494235)
chr1 (32-119)||(4659512-4659599)
chr1 (40-151)||(47479912-47480023)
chr1 (27-164)||(45889182-45889320)
chr1 (50-164)||(51749141-51749255)
chr1 (43-151)||(10370135-10370244)
chr1 (21-102)||(40019857-40019938)
chr1 (135-164)||(48242633-48242662)
chr1 (50-102)||(32348316-32348368)
chr1 (54-102)||(51848654-51848702)
chr1 (48-164)||(52432348-52432464)
[»] chr8 (25 HSPs)
chr8 (42-164)||(39171579-39171700)
chr8 (22-164)||(42412312-42412454)
chr8 (27-164)||(5392085-5392222)
chr8 (43-164)||(5962423-5962544)
chr8 (47-164)||(44790376-44790493)
chr8 (48-164)||(33190864-33190980)
chr8 (47-164)||(38252391-38252509)
chr8 (47-164)||(22324909-22325026)
chr8 (47-164)||(31410562-31410679)
chr8 (33-164)||(32241364-32241495)
chr8 (47-164)||(12653723-12653840)
chr8 (16-79)||(7042875-7042938)
chr8 (47-164)||(2349386-2349504)
chr8 (47-164)||(29615834-29615951)
chr8 (33-161)||(37219701-37219832)
chr8 (33-73)||(39416437-39416477)
chr8 (27-102)||(40316523-40316598)
chr8 (40-102)||(7258314-7258376)
chr8 (123-160)||(7042792-7042829)
chr8 (65-158)||(9014745-9014838)
chr8 (254-283)||(27987655-27987684)
chr8 (254-283)||(28044957-28044986)
chr8 (47-164)||(5878179-5878297)
chr8 (64-160)||(29730867-29730963)
chr8 (21-69)||(36649645-36649693)
[»] chr2 (33 HSPs)
chr2 (47-164)||(23684995-23685112)
chr2 (26-164)||(28527000-28527138)
chr2 (54-164)||(30757529-30757639)
chr2 (48-119)||(15859300-15859371)
chr2 (47-164)||(28108329-28108446)
chr2 (47-164)||(28925802-28925919)
chr2 (27-164)||(36103235-36103372)
chr2 (27-154)||(565135-565262)
chr2 (37-164)||(11726666-11726793)
chr2 (38-164)||(5211903-5212029)
chr2 (26-164)||(43950381-43950519)
chr2 (47-164)||(41436115-41436231)
chr2 (24-164)||(10069516-10069656)
chr2 (47-102)||(40965112-40965167)
chr2 (47-161)||(2756713-2756827)
chr2 (27-161)||(31545952-31546086)
chr2 (16-164)||(20027072-20027221)
chr2 (16-69)||(45464138-45464191)
chr2 (16-119)||(10394208-10394309)
chr2 (18-99)||(883078-883159)
chr2 (48-161)||(3100439-3100552)
chr2 (47-164)||(8550596-8550713)
chr2 (254-283)||(8550723-8550752)
chr2 (255-284)||(9472418-9472447)
chr2 (250-283)||(18181290-18181323)
chr2 (295-347)||(33602355-33602408)
chr2 (28-73)||(37529006-37529051)
chr2 (21-102)||(39547890-39547971)
chr2 (33-87)||(41365831-41365887)
chr2 (42-102)||(3123744-3123804)
chr2 (48-164)||(18181168-18181284)
chr2 (252-284)||(19515877-19515909)
chr2 (128-164)||(39095667-39095703)
[»] scaffold0058 (1 HSPs)
scaffold0058 (45-164)||(14492-14611)
[»] scaffold0321 (1 HSPs)
scaffold0321 (53-158)||(9511-9617)
[»] scaffold0006 (1 HSPs)
scaffold0006 (48-164)||(229859-229974)
[»] scaffold0227 (1 HSPs)
scaffold0227 (47-117)||(8949-9019)
[»] scaffold0364 (1 HSPs)
scaffold0364 (33-102)||(13277-13346)
[»] scaffold0005 (1 HSPs)
scaffold0005 (21-66)||(54842-54887)
[»] scaffold0034 (1 HSPs)
scaffold0034 (38-94)||(98931-98987)
[»] scaffold0045 (1 HSPs)
scaffold0045 (135-164)||(26358-26387)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 226 - 395
Target Start/End: Original strand, 26247477 - 26247645
Alignment:
Q  226 tagcaatgctctgtattaaattgaaataatgaaagtagtattaattatagttataattg-nnnnnnnnnnttaatattgaattgaaagtgaaataaatca 324  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  26247477 tagcaatgctctgtattaaattgaaataatgaaaatagtattaattatagttataattgaagaaaaaagattaatattgaattgaaagtgaaataaatca 26247576  T
Q  325 attattttaaaacaatattttttctacnnnnnnnnnccatttattgagatggagagagtatactcacaaag 395  Q
     |||||||| || |||| |||||||||         ||||||||| |||||||||||||||||||||||||    
T  26247577 gttattttagaataata-tttttctac-aaaaaaacccatttatttagatggagagagtatactcacaaag 26247645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 54122164 - 54122295
Alignment:
Q  33 tgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctca 132  Q
    |||| ||||| || |||||||||||||||||| |||| ||| ||||| ||||| |||||||||||||||| | ||||||| ||||||   |||| ||||     
T  54122164 tgagccattttttcatttcacacatattaagacaaatgtataaatgaaggagagagaaaaatagttttaaatgtttttgttaagtattggtgcattctcc 54122263  T
Q  133 attatcataaatgtaaagtggaatatattgaa 164  Q
    | ||||||||||| |||||| |||||||||||    
T  54122264 actatcataaatgcaaagtgaaatatattgaa 54122295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 54845477 - 54845587
Alignment:
Q  54 acatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaagtgg 153  Q
    ||||||||||||| || ||| ||||| ||||| |||||||||||||||| | ||||||| ||| ||| ||||| |||| | ||||||||||| |||||||    
T  54845477 acatattaagaaatatgtataaatgaaggagagagaaaaatagttttaagtgtttttgttaaggatcgatgcattctctagtatcataaatgcaaagtgg 54845576  T
Q  154 aatatattgaa 164  Q
    |||||||||||    
T  54845577 aatatattgaa 54845587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 157
Target Start/End: Complemental strand, 2868747 - 2868617
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| ||||||||||| | ||||||||||||||||||||||| ||| ||||| ||||| |||||||| ||||||| |  |||||| | ||||   ||||    
T  2868747 attaactgagtcatttgctcatttcacacatattaagaaaaatgtataaatgaaggagagagaaaaatggttttaagttcttttgttatgtattgctgca 2868648  T
Q  127 gtctcaattatcataaatgtaaagtggaata 157  Q
     |||| | | ||||||||| |||||||||||    
T  2868647 ttctccactgtcataaatgcaaagtggaata 2868617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 43639471 - 43639587
Alignment:
Q  48 tttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgta 147  Q
    ||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||| |  | |||| ||||||  ||||| | || | ||||||||||| |    
T  43639471 tttcacacatattaagacaaatatataaatgaaggagagagaaaaatggttttaagtgctgttgttaagtattgatgcattttccactatcataaatgca 43639570  T
Q  148 aagtggaatatattgaa 164  Q
    ||||| |||||||||||    
T  43639571 aagtgaaatatattgaa 43639587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 53876359 - 53876507
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaa 115  Q
    |||| |||| |||||| |||||||||||||||||||| | |||||||||||||| ||| ||||| ||||  | ||||||  |||||| |  |||||| ||    
T  53876359 ctccgtcctcaattaactgagtcatttgtttatttcatagatattaagaaaaatgtataaatgaaggagtgaaaaaaatgattttaagtgcttttgttaa 53876458  T
Q  116 gtatcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||   |||| | || | |||||||||||||||||| |||||||||||    
T  53876459 atatttgtgcattttccactatcataaatgtaaagtgaaatatattgaa 53876507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 32023050 - 32023172
Alignment:
Q  43 gtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaat-agttttaattatttttgtgaagtatcaatgcagtctcaattatcata 141  Q
    |||||||| |||||||||||| ||||| ||| ||||| ||||| |||||||| |||||||| || |||||| ||||||   |||| |||| | ||| |||    
T  32023050 gtttattttacacatattaaggaaaatgtataaatgaaggagatagaaaaataagttttaagtacttttgttaagtattggtgcattctccactattata 32023149  T
Q  142 aatgtaaagtggaatatattgaa 164  Q
    |||| ||||| ||||||||||||    
T  32023150 aatgcaaagttgaatatattgaa 32023172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 9017954 - 9017837
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    |||||||||||||||| |||||| ||| |||||  |||| |||||||||||||||| |  |||||| ||||||   |||| |||| | ||| |||||||     
T  9017954 atttcacacatattaaaaaaaatgtataaatgaaagagagagaaaaatagttttaagtgcttttgttaagtattggtgcattctccactattataaatgc 9017855  T
Q  147 aaagtggaatatattgaa 164  Q
    |||||| |||||||||||    
T  9017854 aaagtgaaatatattgaa 9017837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 10855159 - 10855030
Alignment:
Q  35 agtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaat 134  Q
    ||||||||| | ||||||||| |||||||| |||| ||| ||||| ||||| |||||||||||||||| | ||||| | | ||||   |||| | || |     
T  10855159 agtcatttgatcatttcacacgtattaagataaatgtataaatgaaggagagagaaaaatagttttaagtgtttttattatgtattggtgcattatccac 10855060  T
Q  135 tatcataaatgtaaagtggaatatattgaa 164  Q
    | ||||||||| ||||||||||||||||||    
T  10855059 tctcataaatgcaaagtggaatatattgaa 10855030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 33994810 - 33994693
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||| ||||||||| ||| ||||| ||||| ||||||||| |||||| |    |||| ||||||   |||| |||| | ||||||||||||    
T  33994810 atttcacacgtatcaagaaaaatgtataaatgaaggagagagaaaaataattttaagtgcacttgttaagtattggtgcattctccactatcataaatgt 33994711  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  33994710 aaagtggaatatattgaa 33994693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 36097589 - 36097726
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| ||||||||||| | |||||| |||||||||||| ||  ||| ||||| ||||| |||||||| ||||||| || | |||| |||||||  ||||    
T  36097589 attaactgagtcatttgctcatttcatacatattaagaagaacgtataaatgaaggagagagaaaaatggttttaagtactcttgttaagtatcggtgca 36097688  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| | | | | ||||| ||||||||||||||||||    
T  36097689 ttctccactgttagaaatgcaaagtggaatatattgaa 36097726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 39866507 - 39866624
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||||||||||||||||| ||| ||||| ||| | |||||||||||||||| |  |||||| ||||||   || | |||| | |||||||||||     
T  39866507 atttcacacatattaagaaaaatgtataaatgaaggaaagagaaaaatagttttaagtgattttgttaagtattggtgtattctccactatcataaatgc 39866606  T
Q  147 aaagtggaatatattgaa 164  Q
    |||||| |||| ||||||    
T  39866607 aaagtgaaatacattgaa 39866624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 48744413 - 48744295
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaa-tagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatg 145  Q
    ||||||||| ||||||||||| | ||| ||||| | ||||| ||||| ||||||||| |   ||||| ||||||  ||||| |||| | |||||||||||    
T  48744413 atttcacacgtattaagaaaagtgtataaatgaagaagaaaaaaaaaatagttttaagtgcatttgttaagtattgatgcattctccactatcataaatg 48744314  T
Q  146 taaagtggaatatattgaa 164  Q
    ||||||| |||||||||||    
T  48744313 taaagtgaaatatattgaa 48744295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 17776928 - 17777065
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| ||||||||||| | ||||||||| |||||| |||||| ||| |||||  |||| |||||||| ||||||  |  |||| | ||||||   ||||    
T  17776928 attaactgagtcatttgctcatttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggttttaggtgctttttttaagtatttgtgca 17777027  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| | || |||||||| ||||||||||||||||||    
T  17777028 ttctccactaccataaatgcaaagtggaatatattgaa 17777065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 19078229 - 19078366
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| ||||||||||| | ||||||||| |||||| |||||| ||| |||||  |||| |||||||| ||||||  |  |||| | ||||||   ||||    
T  19078229 attaactgagtcatttgctcatttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggttttaggtgctttttttaagtatttgtgca 19078328  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| | || |||||||| ||||||||||||||||||    
T  19078329 ttctccactaccataaatgcaaagtggaatatattgaa 19078366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 32827258 - 32827375
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||| ||| ||||| ||||| | |||||||||||||| |    |||| | ||||   |||| |||| | ||||||||||||    
T  32827258 atttcacacgtattaagaaaaatgtataaatgaaggagagaaaaaaatagttttaagtgcacttgttacgtattggtgcattctccactatcataaatgt 32827357  T
Q  147 aaagtggaatatattgaa 164  Q
    |||||| |||||||||||    
T  32827358 aaagtgaaatatattgaa 32827375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 22202300 - 22202376
Alignment:
Q  26 aattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    |||||| |||||||||| || |||||||||||||||||| |||| ||| ||||| ||| | ||||||||| ||||||    
T  22202300 aattaactgagtcattttttaatttcacacatattaagataaatgtataaatgaaggaaagagaaaaataattttaa 22202376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 54458252 - 54458380
Alignment:
Q  37 tcatttgtttatttcacacatattaagaaaaata-tatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaatt 135  Q
    |||||| || |||||| | ||||||||||||||  ||| ||| | | ||| ||||||||  |||||| |  |||||| ||||||   |||| |||| |||    
T  54458252 tcatttattcatttcataaatattaagaaaaattgtataaataaagaagatagaaaaatgattttaagtgattttgttaagtatgggtgcattctccatt 54458351  T
Q  136 atcataaatgtaaagtggaatatattgaa 164  Q
    |||||||||||||||||||||||||||||    
T  54458352 atcataaatgtaaagtggaatatattgaa 54458380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 27153034 - 27152959
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||| ||||||||||||| |||| ||| |||||||||||||||||| ||||  | ||| ||||||||| ||||||    
T  27153034 attaagtgagtcatttgttcattttacatatattaagaaaaatatataaatgtagaagatagaaaaatatttttaa 27152959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 26134660 - 26134774
Alignment:
Q  50 tcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaa 149  Q
    ||||||||||||||| |||| ||| ||||| ||||| |||||||| ||||||| |  | |||| |||||| | |  | |||| | ||||||||||| |||    
T  26134660 tcacacatattaagacaaatgtataaatgaaggagagagaaaaattgttttaagtgctcttgttaagtattagtctattctccactatcataaatgcaaa 26134759  T
Q  150 gtggaatatattgaa 164  Q
    ||| |||||||||||    
T  26134760 gtgaaatatattgaa 26134774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 14756042 - 14756123
Alignment:
Q  21 tcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||| ||||| ||||||||||| | |||| |||||||||||||||||| ||| | | | ||||| ||||||||| ||||||    
T  14756042 tcctagattaactgagtcatttgctcattttacacatattaagaaaaatgtataattaaaggagagagaaaaataattttaa 14756123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 401
Target Start/End: Original strand, 26250375 - 26250468
Alignment:
Q  305 attgaaagtgaaataaatcaattattttaaaacaatattttttctacnnnnnnnnnccatttattgagatggagagagtatactcacaaaggggcgc 401  Q
    |||||||||||||||||||| |||||| | || ||||||||||||||         ||||||||| |||||||||| ||||||||||||||| ||||    
T  26250375 attgaaagtgaaataaatcagttattt-agaataatattttttctacaaaaaac--ccatttatttagatggagagggtatactcacaaaggcgcgc 26250468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 17274830 - 17274779
Alignment:
Q  51 cacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||||||||||||| ||| ||||| ||||  ||||||||||||||||    
T  17274830 cacacatattaagaaaaatgtataaatgaaggagggagaaaaatagttttaa 17274779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 41031728 - 41031673
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||| |||||| |||||| |||||| || | ||||||||||||||||||||    
T  41031728 atttcacacgtattaaaaaaaatgtatgaaagaagaagaaagaaaaatagttttaa 41031673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 30261542 - 30261572
Alignment:
Q  134 ttatcataaatgtaaagtggaatatattgaa 164  Q
    |||||||||||||||||||||||||||||||    
T  30261542 ttatcataaatgtaaagtggaatatattgaa 30261572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 11529021 - 11529062
Alignment:
Q  38 catttgtttatttcacacatattaagaaaaatatatgaatga 79  Q
    |||||| | ||||||||||||||||||||||||||| |||||    
T  11529021 catttgctcatttcacacatattaagaaaaatatataaatga 11529062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 49408671 - 49408590
Alignment:
Q  38 catttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtat 119  Q
    |||||| | |||||| |||||||||||| ||| ||| ||||| ||| | |||||||||||||||| | || |||| ||||||    
T  49408671 catttgctcatttcatacatattaagaataatttataaatgaaggaaagagaaaaatagttttaagtgttcttgttaagtat 49408590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 37041948 - 37041984
Alignment:
Q  248 gaaataatgaaagtagtattaattatagttataattg 284  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  37041948 gaaatgatgaaagtagtattaattagagttataattg 37041984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 17237209 - 17237079
Alignment:
Q  34 gagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaa 133  Q
    |||||||||| | ||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||| |  |||||| |||||| | || | |||  |    
T  17237209 gagtcatttgctcatttcacacctattaagaaaaatatataaatgaaggagagagaaaaatagttttaagtgattttgttaagtattagtggattcttta 17237110  T
Q  134 ttatcataaatgtaaagtggaatatattgaa 164  Q
     ||||||||||| ||||||||||||||||||    
T  17237109 ctatcataaatgcaaagtggaatatattgaa 17237079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 39979935 - 39979816
Alignment:
Q  45 ttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaat 144  Q
    ||||||||||| ||||||||||||| ||| ||||| | |||||||||||||||||||| |    |||| |||||||  |||| |||| | ||||||||||    
T  39979935 ttatttcacacgtattaagaaaaatgtataaatgaagtagaaagaaaaatagttttaagtgcacttgttaagtatcggtgcattctccactatcataaat 39979836  T
Q  145 gtaaagtggaatatattgaa 164  Q
    ||||||||||||||||||||    
T  39979835 gtaaagtggaatatattgaa 39979816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 28974486 - 28974341
Alignment:
Q  20 atcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtat 119  Q
    ||||||||| ||  ||||||||||||||||||||||||||||||| |||| ||| |||||  | || | |||| | ||||||| | || |||| ||||||    
T  28974486 atcctaaatgaatcgagtcatttgtttatttcacacatattaagacaaatgtataaatgaaagggagataaaagtggttttaagtgttgttgttaagtat 28974387  T
Q  120 caatgcagtctcaattatcataaatgtaaagtggaatatattgaaa 165  Q
       |||| |||| ||||||||||||| |||| ||||||||||||||    
T  28974386 tggtgcattctccattatcataaatgcaaaggggaatatattgaaa 28974341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 1825200 - 1825319
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatca--atgcagtctcaattatcataaat 144  Q
    ||||||||||||||||||||||| ||| ||| | ||||| |||||||||||||||| |    |||| |||||| |  ||||| |||||| | ||||||||    
T  1825200 atttcacacatattaagaaaaatgtataaataaaggagatagaaaaatagttttaagtgcacttgttaagtattagtatgcattctcaactttcataaat 1825299  T
Q  145 gtaaagtggaatatattgaa 164  Q
    ||||||||||||||||||||    
T  1825300 gtaaagtggaatatattgaa 1825319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 22872309 - 22872459
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatt--tttgtg 113  Q
    |||| ||| ||||||| |||| |||||| | ||||||||||||||||||||||| ||| | ||| | ||| |||||||| ||||||| |  |  |||||     
T  22872309 ctccgtcccaaattaagtgagccatttgctcatttcacacatattaagaaaaatgtataagtgaagaagagagaaaaatggttttaagtgctcgtttgtc 22872408  T
Q  114 aagtatcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    ||||||   |||| |||| ||||||||||||| ||||||||||||||||||    
T  22872409 aagtattggtgcattctccattatcataaatgcaaagtggaatatattgaa 22872459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 18849704 - 18849830
Alignment:
Q  38 catttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattat 137  Q
    ||||| ||||||||||||||||||||| |||| ||| ||||| ||||||||||| || ||||||| |  | |||| ||||||   |||| |||| | |||    
T  18849704 catttttttatttcacacatattaagacaaatgtataaatgaaggagaaagaaatatggttttaagtgctcttgttaagtattggtgcattctccactat 18849803  T
Q  138 cataaatgtaaagtggaatatattgaa 164  Q
    |||||||| |||||| |||||||||||    
T  18849804 cataaatgcaaagtgaaatatattgaa 18849830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 54729432 - 54729555
Alignment:
Q  45 ttatttcacacatattaagaaa----aatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcat 140  Q
    ||||||||||||||||||||||    ||| ||| |||||  |||| |||||||||||||||| | ||||||| |||||| | || | |||| | ||||||    
T  54729432 ttatttcacacatattaagaaagaaaaatgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattagtgtattctccactatcat 54729531  T
Q  141 aaatgtaaagtggaatatattgaa 164  Q
    ||||| ||||||||||||||||||    
T  54729532 aaatgcaaagtggaatatattgaa 54729555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 4360342 - 4360479
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| |||| |||||||| ||||||||||||||||||||||  ||| |||||  || | |||||||| ||||||| |  |||||| ||||||   ||||    
T  4360342 attaactgagccatttgttcatttcacacatattaagaaaaaagtataaatgaatgaaagagaaaaatggttttaagtgcttttgttaagtattggtgca 4360441  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| | || |||||||| ||||||||||||||||||    
T  4360442 ttctccactagcataaatgcaaagtggaatatattgaa 4360479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 49449023 - 49448877
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaa 115  Q
    |||||||||||| ||| | ||||||||||| ||||||||  ||||||||||||| ||| | ||| ||||| |||||||| ||||||| |  | |||| ||    
T  49449023 ctccatcctaaagtaagtcagtcatttgttcatttcaca--tattaagaaaaatgtataagtgaaggagagagaaaaatggttttaagtgctcttgtcaa 49448926  T
Q  116 gtatcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    ||||   |||| |||| ||||||||||||| |||||  |||||||||||    
T  49448925 gtatttgtgcattctctattatcataaatgcaaagtataatatattgaa 49448877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 38160086 - 38160223
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| ||||||||||| | |||| | | |||||||||||||| ||| ||| | ||||| |||||||| ||||||| | | ||||| || |||  |||||    
T  38160086 attaagtgagtcatttgctcattttatatatattaagaaaaatgtataaataaaggagagagaaaaattgttttaagtgtctttgtcaaatattgatgca 38160185  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| ||||||||||||  |||||| |||||||||||    
T  38160186 ttctccattatcataaatacaaagtgaaatatattgaa 38160223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 3686170 - 3686047
Alignment:
Q  43 gtttatttcacacatattaagaaaaatatatgaatgagggagaaag--aaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcat 140  Q
    |||||||| |||||||||||| ||||||||| ||||| ||||| ||  ||||| |||||||| || |||||| ||||||   |||| |||| | ||| ||    
T  3686170 gtttattttacacatattaaggaaaatatataaatgaaggagataggaaaaaaaagttttaagtacttttgttaagtattggtgcattctccactattat 3686071  T
Q  141 aaatgtaaagtggaatatattgaa 164  Q
    ||||| ||||| ||||||||||||    
T  3686070 aaatgcaaagttgaatatattgaa 3686047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 50714766 - 50714618
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaa 115  Q
    |||||||  ||||||| |||||||||||||||||||| | |||||||||||||| ||| | |||  |||  | | |||||||||||| |  | |||| ||    
T  50714766 ctccatctcaaattaagtgagtcatttgtttatttcatatatattaagaaaaatttataagtgaaagagggatataaatagttttaagtgctcttgtcaa 50714667  T
Q  116 gtatcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    |||  | |||| || | ||||||||||||  ||||||||||||||||||    
T  50714666 gtagtagtgcattcaccattatcataaattgaaagtggaatatattgaa 50714618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 43334955 - 43335094
Alignment:
Q  25 aaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatg 124  Q
    ||||||||||| ||  ||| | ||||||||||||||||||||||| ||| |||||  |  | ||||||||| |||||| | || |||| || ||| | ||    
T  43334955 aaattaaatgaatctcttgctcatttcacacatattaagaaaaatgtataaatgaatgtaatagaaaaataattttaagtgttcttgtcaaatattagtg 43335054  T
Q  125 cagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    || |||| |||||  |||||| ||||||||||||||||||    
T  43335055 cattctccattattttaaatggaaagtggaatatattgaa 43335094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 21241073 - 21240991
Alignment:
Q  21 tcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaag-aaaaatagttttaa 102  Q
    ||||||||||| ||||||||||||| |||| | |||||||||||||||| |||   ||| ||||| || ||||||||||||||    
T  21241073 tcctaaattaagtgagtcatttgttcatttgaaacatattaagaaaaatgtataggtgaaggagagagaaaaaatagttttaa 21240991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 42024158 - 42024272
Alignment:
Q  50 tcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaa 149  Q
    ||||||||||||||| |||| ||| ||||| ||||| |||||||| ||||||| || | |||| ||||||   |  | |||| | ||| ||||||| |||    
T  42024158 tcacacatattaagacaaatgtataaatgaaggagagagaaaaatggttttaactactcttgttaagtattggtctattctccactattataaatgcaaa 42024257  T
Q  150 gtggaatatattgaa 164  Q
    |||||||||||||||    
T  42024258 gtggaatatattgaa 42024272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 14784888 - 14784843
Alignment:
Q  21 tcctaaattaaatgagtcatttgtttatttcacacatattaagaaa 66  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||    
T  14784888 tcctaaattaagtgagctatttgtttatttcacacatattaagaaa 14784843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 25250733 - 25250770
Alignment:
Q  309 aaagtgaaataaatcaattattttaaaacaatattttt 346  Q
    |||||||||||||||||||||||||||||||| |||||    
T  25250733 aaagtgaaataaatcaattattttaaaacaattttttt 25250770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 41203902 - 41203773
Alignment:
Q  35 agtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaat 134  Q
    ||||||||| |  |||||||| ||||||||||||| ||| ||||| ||||| |||||||| ||||| | |  | |||| ||||||  ||||| |||  |     
T  41203902 agtcatttgctcgtttcacacgtattaagaaaaatgtataaatgaaggagatagaaaaatggtttttagtgctcttgttaagtattgatgcattcttcac 41203803  T
Q  135 tatcataaatgtaaagtggaatatattgaa 164  Q
    || |||||||  ||||||||||||||||||    
T  41203802 taccataaatacaaagtggaatatattgaa 41203773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 8295202 - 8295127
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||| |||| |||||| | |||||||||| |||||||||||| ||| |||||  |||| |||||||| |||||||    
T  8295202 attaactgagccatttgctcatttcacacaaattaagaaaaatgtataaatgaaagagagagaaaaattgttttaa 8295127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 14452104 - 14452065
Alignment:
Q  29 taaatgagtcatttgtttatttcacacatattaagaaaaa 68  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  14452104 taaatgagtcatttgttcatttcacacttattaagaaaaa 14452065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 16493238 - 16493367
Alignment:
Q  33 tgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctca 132  Q
    |||| ||||| || |||||||||||||||||| |||| ||| ||| |  |||| | |||||| ||||||| | ||||||| ||||||   |||| |||||    
T  16493238 tgagccattttttcatttcacacatattaagataaatgtataaataaaagagagaaaaaaatggttttaagtgtttttgt-aagtatttgtgcattctca 16493336  T
Q  133 attatcataaatgtaaagtggaatatattgaa 164  Q
      |||||| |||| ||||||||||||||||||    
T  16493337 gctatcat-aatgcaaagtggaatatattgaa 16493367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 41371226 - 41371301
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||| |||||||| |||| |  ||||||||||||||| |||||||| ||||| ||||  | ||||||||||||||    
T  41371226 attaactgagtcatatgttcaaatcacacatattaagacaaatatataaatgaaggagtgaaaaaaatagttttaa 41371301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 45290201 - 45290134
Alignment:
Q  35 agtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||| | |||| |||||||||||||||||| ||| ||| | |||||  |||||||||||||||    
T  45290201 agtcatttgctcatttaacacatattaagaaaaatgtataaataaaggagagggaaaaatagttttaa 45290134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 25149517 - 25149487
Alignment:
Q  134 ttatcataaatgtaaagtggaatatattgaa 164  Q
    |||||||||||||||||||||||||||||||    
T  25149517 ttatcataaatgtaaagtggaatatattgaa 25149487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 31862942 - 31862828
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    |||||||||||||||| | |||| ||| ||||| |||   |||||||| |||||||||  | |||| ||||||  ||||| |||  | ||||||| |||     
T  31862942 atttcacacatattaaaacaaatgtatcaatgaaggatggagaaaaatggttttaatttctcttgttaagtattgatgcactcttcactatcatagatgc 31862843  T
Q  147 aaagtggaatatatt 161  Q
    |||||||||||||||    
T  31862842 aaagtggaatatatt 31862828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 39258204 - 39258246
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaat 69  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||    
T  39258204 attaattgagtcatttgcttatttcacacatattaaaaaaaat 39258246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 40881186 - 40881256
Alignment:
Q  87 agaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaagtggaata 157  Q
    |||||||||||||||||||  ||||| || |||  ||| | |||| | |||||||||||||||||||||||    
T  40881186 agaaaaatagttttaattacatttgttaaatattgatgtattctccactatcataaatgtaaagtggaata 40881256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 43335146 - 43335196
Alignment:
Q  295 ttaatattgaattgaaa-gtgaaataaatcaattattttaaaacaatattt 344  Q
    ||||||||| ||||||| ||||||||||||| |||||||| ||||||||||    
T  43335146 ttaatattgtattgaaaagtgaaataaatcagttattttagaacaatattt 43335196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 50328215 - 50328253
Alignment:
Q  309 aaagtgaaataaatcaattattttaaaacaatatttttt 347  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  50328215 aaagtgaaatagatcaattattttaatacaatatttttt 50328253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Complemental strand, 4354473 - 4354444
Alignment:
Q  255 tgaaagtagtattaattatagttataattg 284  Q
    ||||||||||||||||||||||||||||||    
T  4354473 tgaaagtagtattaattatagttataattg 4354444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 4357741 - 4357648
Alignment:
Q  26 aattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtat 119  Q
    |||||| |||||||||   | |||||| | |||||||||||||||||| ||||| ||||| ||||| ||  |||||| | ||||||| ||||||    
T  4357741 aattaactgagtcattgactcatttcatatatattaagaaaaatatataaatgaaggagagagaaagatgattttaagtgtttttgttaagtat 4357648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 4727500 - 4727447
Alignment:
Q  295 ttaatattgaattgaaa-gtgaaataaatcaattattttaaaacaatatttttt 347  Q
    ||||||||| ||||||| |||||||  |||||||||||||| ||||||||||||    
T  4727500 ttaatattgcattgaaaagtgaaatggatcaattattttaatacaatatttttt 4727447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 38977056 - 38977027
Alignment:
Q  135 tatcataaatgtaaagtggaatatattgaa 164  Q
    ||||||||||||||||||||||||||||||    
T  38977056 tatcataaatgtaaagtggaatatattgaa 38977027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 40020868 - 40020921
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaat 69  Q
    |||| ||||||||||| |||  |||||| | |||||||||||||||||||||||    
T  40020868 ctccttcctaaattaagtgacccatttggtcatttcacacatattaagaaaaat 40020921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 48740585 - 48740556
Alignment:
Q  135 tatcataaatgtaaagtggaatatattgaa 164  Q
    ||||||||||||||||||||||||||||||    
T  48740585 tatcataaatgtaaagtggaatatattgaa 48740556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 51076534 - 51076587
Alignment:
Q  295 ttaatattgaattgaaa-gtgaaataaatcaattattttaaaacaatatttttt 347  Q
    ||||||||| ||||||| || |||||||||| |||||||| |||||||||||||    
T  51076534 ttaatattgcattgaaaagtaaaataaatcacttattttagaacaatatttttt 51076587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 51572350 - 51572403
Alignment:
Q  295 ttaatattgaattgaaa-gtgaaataaatcaattattttaaaacaatatttttt 347  Q
    ||||||||| ||||||| ||||||||| ||||||||||||  ||||||||||||    
T  51572350 ttaatattgtattgaaaagtgaaataagtcaattattttaggacaatatttttt 51572403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 2906824 - 2906744
Alignment:
Q  39 atttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtat 119  Q
    |||||||||||||||||||||||| ||| || ||| |||||  ||||  ||||||| ||||||| | |||| || ||||||    
T  2906824 atttgtttatttcacacatattaaaaaatatgtataaatgaatgagagtgaaaaatggttttaaatgttttcgttaagtat 2906744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 4354603 - 4354548
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatg--agggagaaagaaaaatagtttt 100  Q
    ||||||||||||||||||||||||||| || |  || |||| ||||||||||||||    
T  4354603 atttcacacatattaagaaaaatatataaaagaaagagagagagaaaaatagtttt 4354548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 27790353 - 27790397
Alignment:
Q  25 aaattaaatgagtcatttgtttatttcacacatattaagaaaaat 69  Q
    ||||||| |||  |||||||| |||||||||||||||||||||||    
T  27790353 aaattaagtgaaccatttgttcatttcacacatattaagaaaaat 27790397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 30568836 - 30568744
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtat 119  Q
    ||||| ||||||||||  |||||||| | |||||||||||||| ||| || || ||| | |||||||| ||||||| | || |||| ||||||    
T  30568836 attaagtgagtcatttacttatttcatatatattaagaaaaatgtataaaggaaggaaagagaaaaatggttttaagtgttattgttaagtat 30568744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 35027420 - 35027472
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaa 68  Q
    ||||||||||  |||| |||||  ||||||||||||||||||||||| |||||    
T  35027420 ctccatcctattttaactgagtattttgtttatttcacacatattaaaaaaaa 35027472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 41436633 - 41436517
Alignment:
Q  48 tttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgta 147  Q
    |||||||||||||||||||| | ||| | |||| |||| | |||||| ||||||| |  |||||| | ||||   |||| |||| | ||||||||||| |    
T  41436633 tttcacacatattaagaaaagtgtataagtgagagagagaaaaaaatggttttaagtgcttttgttatgtattggtgcattctccactatcataaatgca 41436534  T
Q  148 aagtggaatatattgaa 164  Q
    |||| |||||| |||||    
T  41436533 aagtagaatattttgaa 41436517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 33988373 - 33988236
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| ||||||||||| | |  ||||||||||||||| |||| ||| ||||| |||||||||||||| ||||||| | ||||||| ||||||   || |    
T  33988373 attaactgagtcatttgctcaaatcacacatattaagacaaatgtataaatgaaggagaaagaaaaatggttttaagtgtttttgttaagtattggtgta 33988274  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| | ||||||||||||||||||||||||||||||    
T  33988273 ttctccactatcataaatgtaaagtggaatatattgaa 33988236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 11099432 - 11099549
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||||||||||||||||| ||| |||||  |||| |||||||||||||||| | ||||||| ||||||   |||| |||| | ||||||||||      
T  11099432 atttcacacatattaagaaaaatgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattggtgcattctccactatcataaatac 11099531  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  11099532 aaagtggaatatattgaa 11099549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 35585562 - 35585688
Alignment:
Q  38 catttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattat 137  Q
    |||||| ||||||||||||||||||||||||| ||| |||| |||| ||||||||||  |||||| |||| |||| ||||||  ||||| | || | |||    
T  35585562 catttgcttatttcacacatattaagaaaaatgtataaatgggggaaaaagaaaaatgattttaaatattcttgttaagtattgatgcattatccactat 35585661  T
Q  138 cataaatgtaaagtggaatatattgaa 164  Q
    ||||||   |||||| |||||||||||    
T  35585662 cataaagacaaagtgaaatatattgaa 35585688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 35646030 - 35646161
Alignment:
Q  33 tgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctca 132  Q
    |||||||||| ||  ||||||||||||||||| |||||||| |||||  |||| ||||||||  |||||| |  | |||| ||||||   |||| ||||     
T  35646030 tgagtcattttttcttttcacacatattaagacaaatatataaatgaatgagagagaaaaatgattttaagtgatcttgttaagtattggtgcattctcc 35646129  T
Q  133 attatcataaatgtaaagtggaatatattgaa 164  Q
    | ||||||||||| ||||||||||||||||||    
T  35646130 actatcataaatgcaaagtggaatatattgaa 35646161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 39183557 - 39183699
Alignment:
Q  22 cctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatca 121  Q
    |||| ||||| ||||||||||||  ||||||||||||||||||||||| ||| |||||   ||| | ||||||  |||||| |  ||| || ||||||      
T  39183557 cctagattaagtgagtcatttgtccatttcacacatattaagaaaaatgtataaatgaaaaagagataaaaatgattttaagtgctttcgttaagtattg 39183656  T
Q  122 atgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    ||| | |||| | ||||||||||| ||||||||||||||||||    
T  39183657 atgaattctccactatcataaatgcaaagtggaatatattgaa 39183699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 16283522 - 16283659
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| ||||| ||||| | ||||||||  |||||| |||||| ||| ||||| ||||| | |||||| ||||||| |  |||||| | ||||   ||||    
T  16283522 attaactgagttatttgatcatttcacatgtattaaaaaaaatgtataaatgaaggagagaaaaaaatggttttaaatgattttgttatgtattggtgca 16283621  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||||| ||||||||||| ||||||||||||||||||    
T  16283622 ttctcaactatcataaatgcaaagtggaatatattgaa 16283659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 41184813 - 41184758
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  41184813 atttcacacgtattaagaaaaatgtataaatgaaggagaaagaaaaatagttttaa 41184758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 35334460 - 35334598
Alignment:
Q  26 aattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgc 125  Q
    |||||| ||||||||||| | |  ||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||| |  | || | ||||||   |      
T  35334460 aattaactgagtcatttgctcaaatcacagatattaagacaaatatataaatgaaggagagagaaaaatagttttaagtgctcttattaagtatttgtct 35334559  T
Q  126 agtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    | |||| | ||||||||||| ||||||||||||||||||    
T  35334560 attctccactatcataaatgcaaagtggaatatattgaa 35334598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 3725339 - 3725226
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||||||||||||||||| ||| || || ||||| |||||||| ||||||| |  | |||| ||||||   |||| |||| | |||||||||||     
T  3725339 atttcacacatattaagaaaaatgtataaaggaaggagagagaaaaatggttttaagtgctattgttaagtattggtgcattctccactatcataaatgc 3725240  T
Q  147 aaagtggaatatat 160  Q
    | ||||||||||||    
T  3725239 atagtggaatatat 3725226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 6610990 - 6610873
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    |||||||| | |||||||||||| ||| ||||| ||||| ||||||||   ||||| | ||||| | ||||||   |||| |||| | ||||||||||||    
T  6610990 atttcacatagattaagaaaaatgtatcaatgaaggagagagaaaaatgagtttaagtgtttttattaagtattggtgcattctccactatcataaatgt 6610891  T
Q  147 aaagtggaatatattgaa 164  Q
    |||||| |||||||||||    
T  6610890 aaagtgaaatatattgaa 6610873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 8692774 - 8692887
Alignment:
Q  48 tttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgta 147  Q
    ||||||||||||||||| |||||||| ||||| ||||  |||||||| ||||||| | || |||| ||||||   |||| |||| | ||||||||||| |    
T  8692774 tttcacacatattaagacaaatatataaatgaaggagggagaaaaatggttttaagtgttcttgttaagtattggtgcattctccactatcataaatgca 8692873  T
Q  148 aagtggaatatatt 161  Q
    || || ||||||||    
T  8692874 aaatgaaatatatt 8692887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 36446615 - 36446759
Alignment:
Q  19 catcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagta 118  Q
    ||||||| ||||| ||||||||||| | ||| ||||||||||||||||||| ||| ||||| ||||| | ||||||  || ||| | ||||||| | |||    
T  36446615 catcctagattaactgagtcatttgctcatt-cacacatattaagaaaaatgtataaatgaaggagataaaaaaatgattataagtgtttttgttatgta 36446713  T
Q  119 tcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    |   |||| |||| | ||||||||||| |||||  |||||||||||    
T  36446714 tttgtgcattctccactatcataaatgcaaagtataatatattgaa 36446759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 36469021 - 36469166
Alignment:
Q  19 catcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagta 118  Q
    ||||||| || || ||||||| ||| | ||||||||||||||||||||||| ||| ||||| ||||| | ||||||  || ||| | ||||||| | |||    
T  36469021 catcctagataaactgagtcagttgctcatttcacacatattaagaaaaatgtataaatgaaggagataaaaaaatgattataagtgtttttgttatgta 36469120  T
Q  119 tcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    |   |||| |||| | ||||||||||| |||||  |||||||||||    
T  36469121 ttggtgcattctccactatcataaatgcaaagtataatatattgaa 36469166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 20190036 - 20189928
Alignment:
Q  57 tattaagaaaaatatatgaatgagggagaaagaaaaa-tagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaagtggaa 155  Q
    |||||||||||||  || ||||| ||||| | ||||| ||||||||| |   ||||| |||||   ||||| |||| |||||||||||||||||||||||    
T  20190036 tattaagaaaaatgcataaatgaaggagagataaaaaatagttttaagtgcatttgttaagtactgatgcattctccattatcataaatgtaaagtggaa 20189937  T
Q  156 tatattgaa 164  Q
    |||||||||    
T  20189936 tatattgaa 20189928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 15814815 - 15814748
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaat 94  Q
    ||||| ||||||||||| |||||||||| ||||||| |||||| ||| ||||| ||||| ||||||||    
T  15814815 attaactgagtcatttgcttatttcacatatattaaaaaaaatgtataaatgaaggagagagaaaaat 15814748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 25814519 - 25814400
Alignment:
Q  45 ttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaat 144  Q
    ||||||||||| |||||||||||||  || ||||| ||||| |||||||||||||||| |    |||| ||||||   | || | || | ||||||||||    
T  25814519 ttatttcacacgtattaagaaaaatgcataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtacattatccactatcataaat 25814420  T
Q  145 gtaaagtggaatatattgaa 164  Q
    |||||||| |||||||||||    
T  25814419 gtaaagtgaaatatattgaa 25814400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 42575579 - 42575710
Alignment:
Q  33 tgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctca 132  Q
    |||| ||||| || |||||||||||||||||| |||| ||| |||||  |||| |||||||| ||||||| |  | |||  ||||||   || | ||||     
T  42575579 tgagccattttttcatttcacacatattaagacaaatgtataaatgaatgagagagaaaaatggttttaagtgctcttggtaagtattggtgtattctcc 42575678  T
Q  133 attatcataaatgtaaagtggaatatattgaa 164  Q
    | ||||||||||| ||||||||||||||||||    
T  42575679 actatcataaatgcaaagtggaatatattgaa 42575710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 858502 - 858433
Alignment:
Q  33 tgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||||| | ||||||||||||||||||||||| ||| ||| | ||||| | |||||| |||||||    
T  858502 tgagtcatttgctcatttcacacatattaagaaaaatgtataaataaaggagagaaaaaaatggttttaa 858433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 13135928 - 13135789
Alignment:
Q  15 actccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtga 114  Q
    ||||| ||| |||||||  |||||||||||| ||||||||| ||||||||||| | ||| ||||| ||||  ||| |||| ||||||| | ||||||||     
T  13135928 actccgtcccaaattaacagagtcatttgttcatttcacacgtattaagaaaactgtataaatgaaggag--agagaaatggttttaagtgtttttgtg- 13135832  T
Q  115 agtatcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
            |||| |||| | ||||||||||| ||||||||||||||||||    
T  13135831 -------gtgcattctccactatcataaatgcaaagtggaatatattgaa 13135789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 13422313 - 13422365
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttt 99  Q
    ||||||||||||||||||||||| |||  |||| |||||||||||||| ||||    
T  13422313 atttcacacatattaagaaaaatgtattgatgaaggagaaagaaaaatggttt 13422365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 41594802 - 41594874
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtat 119  Q
    |||||| |||||||||||||||||||| | |||  |||| ||||||||| |||||| | ||||||| ||||||    
T  41594802 atttcatacatattaagaaaaatatataagtgaatgagagagaaaaataattttaaatgtttttgtcaagtat 41594874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 24231181 - 24231046
Alignment:
Q  26 aattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgc 125  Q
    |||||| ||||||||||| | ||||| |||| |||||||||||| ||| |  ||  |||| ||||||||  |||||| | || |||| ||||||  ||||    
T  24231181 aattaactgagtcatttgctcatttctcaca-attaagaaaaatgtataa--gaatgagagagaaaaatgattttaactgttcttgttaagtattgatgc 24231085  T
Q  126 agtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    | |||| | || |||||||| ||||||||||||||||||    
T  24231084 attctccactaccataaatggaaagtggaatatattgaa 24231046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 284
Target Start/End: Original strand, 6173062 - 6173092
Alignment:
Q  254 atgaaagtagtattaattatagttataattg 284  Q
    |||||||||||||||||||||||||||||||    
T  6173062 atgaaagtagtattaattatagttataattg 6173092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 30437685 - 30437747
Alignment:
Q  38 catttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagtttt 100  Q
    ||||| || ||||||||| ||||||||||||||||| || || | ||| ||||||||||||||    
T  30437685 catttattcatttcacacttattaagaaaaatatattaacgaagaagacagaaaaatagtttt 30437747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 31956698 - 31956660
Alignment:
Q  309 aaagtgaaataaatcaattattttaaaacaatatttttt 347  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  31956698 aaagtgaaatagatcaattattttagaacaatatttttt 31956660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 39060368 - 39060430
Alignment:
Q  38 catttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagtttt 100  Q
    |||||| | ||||||||| ||||||||||||||||| | ||| ||||| |||||||| |||||    
T  39060368 catttgctcatttcacacttattaagaaaaatatattagtgaaggagagagaaaaatggtttt 39060430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 36446801 - 36446854
Alignment:
Q  295 ttaatattgaattgaaag-tgaaataaatcaattattttaaaacaatatttttt 347  Q
    ||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||    
T  36446801 ttaatattgtattgaaaaatgaaatgaatcaattattttaagacaatatttttt 36446854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 36469222 - 36469275
Alignment:
Q  295 ttaatattgaattgaaag-tgaaataaatcaattattttaaaacaatatttttt 347  Q
    ||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||    
T  36469222 ttaatattgtattgaaaaatgaaatgaatcaattattttaagacaatatttttt 36469275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 42211504 - 42211427
Alignment:
Q  25 aaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    |||||||  |||||||||| | |||||||||||||||| |||||| ||| ||||| || |  |||||||| |||||||    
T  42211504 aaattaaccgagtcatttgctcatttcacacatattaaaaaaaatgtataaatgaaggtgggagaaaaatggttttaa 42211427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 4576365 - 4576480
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||||||||||||||||| ||| |||||   | | ||||||| |||||||| | || |||| ||||||   |||| || | |||||||||||||     
T  4576365 atttcacacatattaagaaaaatgtataaatgaaaaaaagagaaaaacagttttaagtgttcttgtcaagtattggtgca-tcaccattatcataaatgc 4576463  T
Q  147 aaagtggaatatattga 163  Q
    ||| ||||| |||||||    
T  4576464 aaaatggaagatattga 4576480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 15254917 - 15254801
Alignment:
Q  48 tttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgta 147  Q
    |||||||| ||||||||||||| ||| ||||  ||| ||||||||||  |||||| | ||||||| | |||| | |||| ||||   |||||| |||| |    
T  15254917 tttcacacgtattaagaaaaatgtataaatggaggaaaaagaaaaatgattttaagtgtttttgttatgtattagtgcattctccgctatcattaatgca 15254818  T
Q  148 aagtggaatatattgaa 164  Q
    || | ||||||||||||    
T  15254817 aattagaatatattgaa 15254801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 17699361 - 17699329
Alignment:
Q  252 taatgaaagtagtattaattatagttataattg 284  Q
    ||||||||||||||||||||| |||||||||||    
T  17699361 taatgaaagtagtattaattaaagttataattg 17699329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 31265935 - 31265815
Alignment:
Q  44 tttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaa 143  Q
    ||||||||||||||||||||| |||| ||| ||||| ||||| |||||||||||||||| |  | |||| ||||||   |||| |||| | |||||||||    
T  31265935 tttatttcacacatattaagacaaatgtataaatgaaggagagagaaaaatagttttaagtgctcttgttaagtattggtgcattctccactatcataaa 31265836  T
Q  144 tgtaaagtggaatatattgaa 164  Q
    |||||||||||||||||||||    
T  31265835 tgtaaagtggaatatattgaa 31265815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 7301034 - 7301151
Alignment:
Q  45 ttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaat 144  Q
    ||||||||||| ||||||||||||| ||| ||| |  ||||  ||||||||||||||| | | ||||| ||||||   |||| |||| ||||||||||||    
T  7301034 ttatttcacacgtattaagaaaaatgtataaataaatgaga--gaaaaatagttttaagtgtgtttgttaagtatttgtgcattctccattatcataaat 7301131  T
Q  145 gtaaagtggaatatattgaa 164  Q
    ||||||||||||||||||||    
T  7301132 gtaaagtggaatatattgaa 7301151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 14312572 - 14312719
Alignment:
Q  17 tccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaag 116  Q
    ||||||| | ||||| || |||||||| |||||||| |  |||||| ||||||  || ||||| ||| | |||||||| ||||||| | ||||||| |||    
T  14312572 tccatcccagattaactgtgtcatttgcttatttcataagtattaataaaaatgcataaatgaaggacatagaaaaatggttttaagtgtttttgttaag 14312671  T
Q  117 tatcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    |||   |||| |||| |||||||||||||||||||| ||| |||||||    
T  14312672 tattggtgcattctccattatcataaatgtaaagtgaaatgtattgaa 14312719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 7739452 - 7739589
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||||||| ||||||| | ||||||||  || |||||||||| ||| | |||  |||| ||||||||||||| || | ||||||| ||||||  |||||    
T  7739452 attaaatgaatcatttgctcatttcacatgtaataagaaaaatgtataagtgaaagagatagaaaaatagtttaaaatgtttttgttaagtattgatgca 7739551  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     || | ||||| ||||||||||||| ||| ||||||||    
T  7739552 ttcaccattattataaatgtaaagtagaagatattgaa 7739589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 15081576 - 15081459
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||| ||| ||||| || || |||||||||||||||| |    |||| ||||||   |||| |||| | ||||||||| ||    
T  15081576 atttcacacgtattaagaaaaatgtataaatgaaggtgagagaaaaatagttttaagtgcacttgttaagtatttgtgcattctccactatcataaacgt 15081477  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  15081476 aaagtggaatatattgaa 15081459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 30063899 - 30064020
Alignment:
Q  43 gtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataa 142  Q
    ||||||||||| ||||||||| ||||| ||| ||||| ||||||||||||| |||||||| |  |||| | ||||||   || | |||| | ||| ||||    
T  30063899 gtttatttcacgcatattaaggaaaatgtataaatgaaggagaaagaaaaaaagttttaagtgcttttattaagtatttgtgtattctccactattataa 30063998  T
Q  143 atgtaaagtggaatatattgaa 164  Q
    ||| ||||||||||||||||||    
T  30063999 atgcaaagtggaatatattgaa 30064020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 33921404 - 33921540
Alignment:
Q  28 ttaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcag 127  Q
    |||| |||| |||||| | ||||| ||| ||||||||||||||||| | ||| ||||| |||||||| ||||| | | | ||||| ||||||   | ||     
T  33921404 ttaactgagccatttgctcatttcgcacttattaagaaaaatatattagtgaaggagagagaaaaatggttttgagtgtgtttgttaagtattggtccat 33921503  T
Q  128 tctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    |||   |||||||||||||||||| ||||||||||||    
T  33921504 tcttctttatcataaatgtaaagtagaatatattgaa 33921540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 9755101 - 9755156
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||| ||||||||||||||||| ||||| | ||| ||||||||||||||||    
T  9755101 atttcacacgtattaagaaaaatatataaatgaagaagagagaaaaatagttttaa 9755156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 14306175 - 14306309
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| || |||||||| |||||||| |  |||||| |||||   || ||||| ||| | |||||||| ||||||| | ||||||| ||||||   ||||    
T  14306175 attaactgtgtcatttgcttatttcataagtattaaaaaaaaagcataaatgaaggacatagaaaaatggttttaagtgtttttgttaagtattggtgca 14306274  T
Q  127 gtctcaattatcataaatgtaaagtggaatatatt 161  Q
     |||| |||||||||||||||||||| ||| ||||    
T  14306275 ttctccattatcataaatgtaaagtgaaatgtatt 14306309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 3604554 - 3604671
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    |||||||||||||||||| |||| ||| ||| |  |||| |||||||| ||||||| |  | |||| ||||||   |||| |||| |||||  ||||||     
T  3604554 atttcacacatattaagacaaatgtataaataaaagagagagaaaaatggttttaagttctcttgttaagtattggtgcattctccattattgtaaatgc 3604653  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  3604654 aaagtggaatatattgaa 3604671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 24552237 - 24552294
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatat 73  Q
    ||||||| |||||||||||| ||||||  |||||||||| ||||||| ||||||||||    
T  24552237 ctccatcttaaattaaatgaatcatttcattatttcacatatattaaaaaaaatatat 24552294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 34915753 - 34915884
Alignment:
Q  35 agtcatttgtttatttcacacatattaagaaaaatatatgaatga--gggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctca 132  Q
    ||||||||| | |||||||| |||||||||||||| ||| || ||  | |||| ||| ||||  |||||| | |||  || ||||||   |||| ||||     
T  34915753 agtcatttgctcatttcacatatattaagaaaaatgtataaacgaaagagagagagagaaatgattttaagtgtttacgttaagtattggtgcattctcc 34915852  T
Q  133 attatcataaatgtaaagtggaatatattgaa 164  Q
    ||||||||||||| ||||||||||||||||||    
T  34915853 attatcataaatgcaaagtggaatatattgaa 34915884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 31723605 - 31723530
Alignment:
Q  89 aaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    |||||||||||||| | ||||| | |||||| |||||| |||  || ||||||||| |||| ||||||||||||||    
T  31723605 aaaaatagttttaagtgtttttatcaagtattaatgcattctttatcatcataaatataaattggaatatattgaa 31723530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 34803789 - 34803818
Alignment:
Q  255 tgaaagtagtattaattatagttataattg 284  Q
    ||||||||||||||||||||||||||||||    
T  34803789 tgaaagtagtattaattatagttataattg 34803818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 118038 - 117987
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatga 79  Q
    ||||| ||| ||||||||| |||||||||||||||| |||||||||| |||||    
T  118038 attaagtgaatcatttgttcatttcacacatattaa-aaaaatatataaatga 117987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 37490552 - 37490689
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| |||||||||| || ||||||||||| ||||||||||| ||| ||||| ||||| ||||||||  |||||| | ||||| | ||||||   ||||    
T  37490552 attaagtgagtcatttattcatttcacacatgttaagaaaaatgtataaatgaaggagagagaaaaatgattttaagtgttttttttaagtattggtgca 37490651  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| | ||||||||||| ||||||||||||||||||    
T  37490652 ttctccactatcataaatgcaaagtggaatatattgaa 37490689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 5724662 - 5724778
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||| ||| ||||| ||||| |||||||||||||||| |    |||| |||||| | |||| |||| | ||||||||||||    
T  5724662 atttcacacgtattaagaaaaatgtataaatgaaggagagagaaaaatagttttaagt-gccttgttaagtattagtgcattctccactatcataaatgt 5724760  T
Q  147 aaagtggaatatattgaa 164  Q
    |||||| |||||||||||    
T  5724761 aaagtgaaatatattgaa 5724778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 47454157 - 47454041
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||||||| ||||| ||||| || ||||||||||||| |    |||| ||||||   |||| |||| | ||||||||||||    
T  47454157 atttcacacgtattaagaaaaatatataaatgaaggagagagtaaaatagttttaagtgcacttgttaagtattggtgcattctccactatcataaatgt 47454058  T
Q  147 aaagtggaatatattga 163  Q
    |||||| ||||||||||    
T  47454057 aaagtgaaatatattga 47454041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 27234675 - 27234558
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||  || | || ||||| ||||||| | ||||||| ||||||  |||||    
T  27234675 attaactgagtcatttgttcatttcacacatattaagaaaaatgtataaatgaatgacagag-aaaattgttttaagtgtttttgttaagtattgatgca 27234577  T
Q  127 gtctcaattatcataaatg 145  Q
     |||| | |||||||||||    
T  27234576 ttctccactatcataaatg 27234558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 2849408 - 2849291
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||||||||||||||||| ||| |||||  |||| ||||||||||||||   | | ||||| ||||||   |||| |||   |||||||||||||    
T  2849408 atttcacacatattaagaaaaatgtataaatgaaagagagagaaaaatagttttgcgtgtctttgtcaagtattggtgcattcttctttatcataaatgt 2849309  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||| ||||||||||||    
T  2849308 aaagtagaatatattgaa 2849291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 45890781 - 45890884
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaa 115  Q
    |||| |||| |||||| ||||| ||||||| ||||||||| ||||||||||||| ||| || || ||||| |||||||| ||||||| |  |||||| ||    
T  45890781 ctccgtcctgaattaactgagttatttgttcatttcacacgtattaagaaaaatgtataaaagaaggagagagaaaaatggttttaaatgcttttgttaa 45890880  T
Q  116 gtat 119  Q
    ||||    
T  45890881 gtat 45890884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 23058971 - 23058858
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||||||| |||||  |||| |||||||||||||||| | || ||||  |||||   |||| |||| | |||||||||||     
T  23058971 atttcacacgtattaagaaaaatatataaatgaaagagagagaaaaatagttttaagtgttcttgt-tagtattggtgcattctccactatcataaatgc 23058873  T
Q  147 aaagtggaatatatt 161  Q
    |||||| ||||||||    
T  23058872 aaagtgaaatatatt 23058858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 31581399 - 31581514
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    |||||| || ||||||||||||| ||  ||||| ||||| | |||||||||||||| ||  ||||| ||||||   |||| |||| | ||||||||||||    
T  31581399 atttcaaacgtattaagaaaaatgta--aatgaaggagagataaaaatagttttaagtacatttgttaagtattggtgcattctccaatatcataaatgt 31581496  T
Q  147 aaagtggaatatattgaa 164  Q
    ||| ||||||||||||||    
T  31581497 aaaatggaatatattgaa 31581514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 2842018 - 2842123
Alignment:
Q  59 ttaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaagtggaatat 158  Q
    ||||||||||| ||| ||||| ||||| |||||||| || |||| | || |||| ||||||  ||||| |||| | ||||||||||| |||||| |||||    
T  2842018 ttaagaaaaatgtataaatgaaggagagagaaaaatggtgttaagtgttattgtcaagtattgatgcattctccactatcataaatgcaaagtgaaatat 2842117  T
Q  159 attgaa 164  Q
    ||||||    
T  2842118 attgaa 2842123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 31394513 - 31394452
Alignment:
Q  25 aaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaa 86  Q
    ||||||||||||||||||| |||||||||| ||||||| ||| |||||| |||||| |||||    
T  31394513 aaattaaatgagtcatttgattatttcacatatattaaaaaatatatataaatgagagagaa 31394452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 7425817 - 7425949
Alignment:
Q  33 tgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtg-aagtatcaatgcagtctc 131  Q
    |||| ||||| || ||||||||| |||||||| |||| ||| |||||  |||| |||||||| ||||||| | || ||||  ||||||   |||| ||||    
T  7425817 tgagccattttttcatttcacacgtattaagacaaatgtataaatgaatgagagagaaaaatggttttaagtgttcttgtttaagtattggtgcattctc 7425916  T
Q  132 aattatcataaatgtaaagtggaatatattgaa 164  Q
     | ||||||||||| ||||||||||||||||||    
T  7425917 cactatcataaatgcaaagtggaatatattgaa 7425949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 11616734 - 11616603
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| |||| |||||| | |||||||||||||||| |||||| ||| ||||| ||||| |||||||| ||||||| |  | |||| ||||||   ||||    
T  11616734 attaactgagccatttgctcatttcacacatattaa-aaaaatgtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattggtgca 11616636  T
Q  127 gtctcaattatcataaatgtaaagtggaatata 159  Q
     |||| | ||||||| ||| |||||||||||||    
T  11616635 ttctccactatcatatatgcaaagtggaatata 11616603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 23186084 - 23186150
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaa 93  Q
    ||||| ||||||||||| | |||||| | |||||||||||||||||| ||||| ||||| |||||||    
T  23186084 attaactgagtcatttgctcatttcatatatattaagaaaaatatataaatgaaggagagagaaaaa 23186150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 29434535 - 29434651
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||||||||||||||| | | | ||||| | ||| |||||||||||||||| |  |||||| ||||||   || | |||| | | |||||||||     
T  29434535 atttcacacatattaagaaaattttttaaatgaag-agagagaaaaatagttttaagtgcttttgttaagtattggtggattctccactttcataaatgc 29434633  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  29434634 aaagtggaatatattgaa 29434651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 31549557 - 31549692
Alignment:
Q  28 ttaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcag 127  Q
    |||| |||||| |||| | |||| |||| |||||||||||| |||| | ||| |||||||||||||  |||||||  | | |||| |||||| | ||||     
T  31549557 ttaactgagtcttttgctcattttacacttattaagaaaaaaatattagtgaaggagaaagaaaaacggttttaaacactcttgtcaagtattagtgcat 31549656  T
Q  128 tctcaattatcataaatgtaaagtggaatatattga 163  Q
    |  | |||||||| |||| ||||| |||||||||||    
T  31549657 ttaccattatcattaatgcaaagtagaatatattga 31549692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 48981809 - 48981754
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||| |||||||| |||| ||| ||||| | ||||||||||||||||||||    
T  48981809 atttcacacgtattaagataaatgtataaatgaagaagaaagaaaaatagttttaa 48981754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 34001802 - 34001930
Alignment:
Q  34 gagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaa 133  Q
    ||||||||||||||||||| |||||||||| ||||||||  ||| |  || | || ||||| ||||||| |  | |||| ||||||  |||  || || |    
T  34001802 gagtcatttgtttatttcagacatattaag-aaaatatacaaataaatgaaagag-aaaatggttttaagtgctcttgttaagtattgatgtggtatcca 34001899  T
Q  134 ttatcataaatgtaaagtggaatatattgaa 164  Q
    |||||||||||| ||||||||||||||||||    
T  34001900 ttatcataaatgcaaagtggaatatattgaa 34001930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 21387522 - 21387551
Alignment:
Q  135 tatcataaatgtaaagtggaatatattgaa 164  Q
    ||||||||||||||||||||||||||||||    
T  21387522 tatcataaatgtaaagtggaatatattgaa 21387551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 49100544 - 49100573
Alignment:
Q  135 tatcataaatgtaaagtggaatatattgaa 164  Q
    ||||||||||||||||||||||||||||||    
T  49100544 tatcataaatgtaaagtggaatatattgaa 49100573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 37157311 - 37157251
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatt 107  Q
    ||||||||| ||||||||||||| |||  |||| ||||| ||||||||| |||||| ||||    
T  37157311 atttcacacgtattaagaaaaatgtatagatgaaggagagagaaaaataattttaagtatt 37157251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 32587918 - 32587801
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||||||||||||||||| ||| ||||| || || ||||||||| |||||| | ||||||| ||||||  ||||| | || |||||||||||||     
T  32587918 atttcacacatattaagaaaaatgtataaatgaaggtgagagaaaaataattttaagtgtttttgttaagtattgatgcattttccattatcataaatgc 32587819  T
Q  147 aaagtggaatatattgaa 164  Q
    |||||| |||||||||||    
T  32587818 aaagtgaaatatattgaa 32587801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 5442525 - 5442376
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgttt-atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtga 114  Q
    |||| ||| ||||||  |||||||||| ||| ||||||||| |||||||| |||| ||| |||||  |||| |||||||| ||||||| |  | |||| |    
T  5442525 ctccgtcccaaattagctgagtcatttttttcatttcacacctattaagacaaatgtataaatgaatgagagagaaaaatggttttaagttatcttgtta 5442426  T
Q  115 agtatcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    ||||| | |||| |||| | ||||||||||| ||||||||||||||||||    
T  5442425 agtattagtgcattctccactatcataaatgcaaagtggaatatattgaa 5442376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 7785206 - 7785346
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgaggga-gaaagaaaaatagttttaattatttttgtga--agtatcaat 123  Q
    ||||| ||||||||||| | |||||||||||| |||||||||| ||| |||||   | || |||||||||||||||| | || |||| |  |||||  ||    
T  7785206 attaactgagtcatttgctcatttcacacatactaagaaaaatgtataaatgaaataagagagaaaaatagttttaagtgttattgttataagtattgat 7785305  T
Q  124 gcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    ||| |||| | |||||||||||||||||| |||||||||||    
T  7785306 gcattctccactatcataaatgtaaagtgaaatatattgaa 7785346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 34814070 - 34813953
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||| ||| | ||| ||||| |||||||||||||||| | || |||| |||||| | |||| |    |||||||||||||     
T  34814070 atttcacacttattaagaaaaatgtattagtgaaggagagagaaaaatagttttaagtgttcttgttaagtattagtgcatttatcattatcataaatgc 34813971  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||| ||||||||||||    
T  34813970 aaagtagaatatattgaa 34813953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 42926307 - 42926170
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| ||||||||| | | |||| |||||||||||||||||| ||| |||||  || | ||||||||  |||||| | ||||||| |||||||  ||||    
T  42926307 attaagtgagtcattcgatcatttgacacatattaagaaaaatgtataaatgaatgaaagagaaaaatgattttaagtgtttttgttaagtatcggtgca 42926208  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| | ||||||||||| ||| || |||||||||||    
T  42926207 ttctccactatcataaatgcaaaatgaaatatattgaa 42926170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 46880590 - 46880521
Alignment:
Q  25 aaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaat 94  Q
    |||||||  |||||||||||||||||||||||||||||||||| | ||| ||||| ||||| ||||||||    
T  46880590 aaattaatcgagtcatttgtttatttcacacatattaagaaaattgtataaatgaaggagagagaaaaat 46880521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 50267393 - 50267510
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||| ||| |||||  | || |||||||||||||||| |    |||| ||||||   |||| |||| ||||||||||||||    
T  50267393 atttcacacgtattaagaaaaatgtataaatgaaagtgagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccattatcataaatgt 50267492  T
Q  147 aaagtggaatatattgaa 164  Q
    |||||| |||||||||||    
T  50267493 aaagtgaaatatattgaa 50267510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 6787400 - 6787288
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||||||| || ||  |||| |||||||||||||||| | | ||||| || ||| | | || | || | ||||||||||||    
T  6787400 atttcacacgtattaagaaaaatatataaacgaaagagagagaaaaatagttttaaatgtatttgttaaatattagtacattatccactatcataaatgt 6787301  T
Q  147 aaagtggaatata 159  Q
    |||||||||||||    
T  6787300 aaagtggaatata 6787288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 27391531 - 27391383
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaa 115  Q
    |||||||||||||||| ||||||||||||| | ||||||| ||||| ||||||| ||| | ||| ||||| ||||||||  |||||| |  | || | ||    
T  27391531 ctccatcctaaattaagtgagtcatttgttcaattcacacttattacgaaaaatgtataagtgaaggagagagaaaaatgattttaagtgctcttattaa 27391432  T
Q  116 gtatcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    ||||   | || |  | ||||||||||||| ||||||||||||||||||    
T  27391431 gtattggttcatttactattatcataaatgcaaagtggaatatattgaa 27391383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 16040249 - 16040115
Alignment:
Q  28 ttaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcag 127  Q
    |||| ||||||||||| | ||||||||  ||||||||||||||||| | | | ||||| |||||||| ||||||| | | ||||| ||||||   | ||     
T  16040249 ttaattgagtcatttgctcatttcacatttattaagaaaaatatattagtcaaggagagagaaaaatggttttaagtgtctttgttaagtattggttcat 16040150  T
Q  128 tctcaattatcataaatgtaaagtggaatatattg 162  Q
    |||   |||||||||||||||||| ||||||||||    
T  16040149 tcttctttatcataaatgtaaagtagaatatattg 16040115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 28908273 - 28908204
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggaga 85  Q
    |||| ||||||||||| | |||||| |||| ||||||||||||||||||||||| ||| ||||| |||||    
T  28908273 ctccctcctaaattaattaagtcatctgttcatttcacacatattaagaaaaatgtataaatgaaggaga 28908204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 46496164 - 46496054
Alignment:
Q  52 acacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaagt 151  Q
    ||||||||||||| |||||||| ||||| |||||  ||||||| ||||| | | || |||| ||| ||  ||| | |||| ||||||||||||| |||||    
T  46496164 acacatattaagacaaatatataaatgaaggaga--gaaaaatggttttgagtgttcttgttaaggattgatgtattctccattatcataaatgcaaagt 46496067  T
Q  152 ggaatatattgaa 164  Q
    |||||||||||||    
T  46496066 ggaatatattgaa 46496054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 17343007 - 17342864
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaa---tata---tgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatc 120  Q
    ||||| ||||||||||| | |||||||| |||||||||||||   ||||   | ||||| |||||  ||||||| ||||||| | ||||||| ||||||     
T  17343007 attaactgagtcatttgctcatttcacagatattaagaaaaaatgtataaattaaatgaaggagagggaaaaatggttttaagtgtttttgttaagtatt 17342908  T
Q  121 aatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
      |||| |||| ||||||||||||  |||||| |||||||||||    
T  17342907 ggtgcattctccattatcataaatacaaagtgaaatatattgaa 17342864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 24234902 - 24234953
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaa 67  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||| ||||    
T  24234902 ctccatcctaaattaaatgagctatttgttcatttcacacatattaaaaaaa 24234953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 49945097 - 49945030
Alignment:
Q  35 agtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||| | ||||||||||||||||||||||| ||| ||||| | ||| |||||||| |||||||    
T  49945097 agtcatttgctcatttcacacatattaagaaaaatgtataaatgaagaagagagaaaaatggttttaa 49945030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 4466090 - 4466224
Alignment:
Q  28 ttaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcag 127  Q
    |||| |||| |||||||| ||||||||| ||||||||||||||||| | |||  |||| |||||||| | ||| | ||  ||||| ||||||   | ||     
T  4466090 ttaattgagccatttgttcatttcacacttattaagaaaaatatattagtgaatgagagagaaaaatgggtttgagtacctttgttaagtattggtccat 4466189  T
Q  128 tctcaattatcataaatgtaaagtggaatatattg 162  Q
    |||   |||||||||||||||||| ||||||||||    
T  4466190 tcttctttatcataaatgtaaagtagaatatattg 4466224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 11425805 - 11425939
Alignment:
Q  28 ttaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcag 127  Q
    |||| |||| |||||| | |||||||   ||||||||||||||||| | ||| ||||| |||||||||||||| | | | ||||| ||||||   | ||     
T  11425805 ttaattgagccatttgctcatttcacgtttattaagaaaaatatattagtgaaggagagagaaaaatagttttgagtgtctttgttaagtattggtccat 11425904  T
Q  128 tctcaattatcataaatgtaaagtggaatatattg 162  Q
    |||   |||||||||||||||||| ||||||||||    
T  11425905 tcttctttatcataaatgtaaagtagaatatattg 11425939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 28839489 - 28839375
Alignment:
Q  50 tcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaa 149  Q
    ||||| ||||||||| |||| ||| ||||| ||||| |||||||||||||||| |  | |||| ||||||   |  | |||| | ||||||||||| |||    
T  28839489 tcacatatattaagacaaatgtataaatgaaggagagagaaaaatagttttaaatgctcttgttaagtattggtctattctccactatcataaatgcaaa 28839390  T
Q  150 gtggaatatattgaa 164  Q
    |||||||||||||||    
T  28839389 gtggaatatattgaa 28839375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 5040510 - 5040647
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| |||||| |||| | |||||||||||||| ||| |||| ||| |||||  |||| |||||||| ||||||  |  | |||| ||||||  |||||    
T  5040510 attaagtgagtcctttgctcatttcacacatatttagacaaatgtataaatgaatgagagagaaaaatggttttaggtgatcttgttaagtattgatgca 5040609  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| | |||||||||||  ||||| |||||||||||    
T  5040610 ttctccactatcataaatgcgaagtgaaatatattgaa 5040647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 36467150 - 36467267
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||| ||| |||||  |||| |||||||||||||||| |    |||| ||||||   || | |||| | ||| ||||||||    
T  36467150 atttcacacgtattaagaaaaatgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtattggtggattctccactatgataaatgt 36467249  T
Q  147 aaagtggaatatattgaa 164  Q
    |||||| |||||||||||    
T  36467250 aaagtgaaatatattgaa 36467267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 49494118 - 49494235
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||| ||| |||||  |||| |||||||||||||||| |    |||| || |||   |  | |||| | ||||||||||||    
T  49494118 atttcacacgtattaagaaaaatgtataaatgaaagagagagaaaaatagttttaagtgcacttgttaaatattggtcaattctccactatcataaatgt 49494217  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  49494218 aaagtggaatatattgaa 49494235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 4659599 - 4659512
Alignment:
Q  32 atgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtat 119  Q
    ||||||| |||||  ||||||||| ||||||||||||| ||| | ||| || || |||||||||||||||| |  | |||||||||||    
T  4659599 atgagtcttttgtccatttcacacttattaagaaaaatgtattagtgaaggggagagaaaaatagttttaagtgctcttgtgaagtat 4659512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 47479912 - 47480023
Alignment:
Q  40 tttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatca 139  Q
    |||||| |||||| |  ||||||||||||||||| ||| |  |||| |||||||| ||||||| || |||||| |||||| |||| | |  | |||||||    
T  47479912 tttgttcatttcatatttattaagaaaaatatatcaataaacgagagagaaaaatggttttaaatacttttgtcaagtattaatgtatttaccattatca 47480011  T
Q  140 taaatgtaaagt 151  Q
    |||||| |||||    
T  47480012 taaatgcaaagt 47480023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 45889182 - 45889320
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgag-ggagaaagaaaaatagttttaattatttttgtgaagtatcaatgc 125  Q
    ||||| ||||||||||||| |  ||||| ||||||||| |||| ||| |||||  ||||| |||||||| ||||||| |  | |||| || |||   |      
T  45889182 attaattgagtcatttgttcaaatcacatatattaagacaaatgtataaatgaaaggagagagaaaaatggttttaagtgctcttgttaactattggtct 45889281  T
Q  126 agtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    | |||| ||||||||||||| ||||||||||||||||||    
T  45889282 attctccattatcataaatgcaaagtggaatatattgaa 45889320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 51749141 - 51749255
Alignment:
Q  50 tcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaa 149  Q
    ||||| ||||||||| |||| ||| ||||| ||||| |||||| |  |||||| | || |||| ||||||   |  | |||| ||||||||||||| |||    
T  51749141 tcacatatattaagataaatgtataaatgaaggagagagaaaactgattttaagtgttcttgttaagtattggtttattctccattatcataaatgcaaa 51749240  T
Q  150 gtggaatatattgaa 164  Q
    |||||||||||||||    
T  51749241 gtggaatatattgaa 51749255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 10370135 - 10370244
Alignment:
Q  43 gtttatttcacacatattaagaaaaatatatgaatgagggagaaag-aaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcata 141  Q
    |||||||| ||| |||||||||||||| ||| ||| | ||||| || |||||||||||||| |  |||||| |||||| |||||| |||  |  ||||||    
T  10370135 gtttattttacatatattaagaaaaatgtataaataaaggagagagaaaaaatagttttaagtgcttttgttaagtattaatgcattcttcaccatcata 10370234  T
Q  142 aatgtaaagt 151  Q
    |||| |||||    
T  10370235 aatgcaaagt 10370244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 40019938 - 40019857
Alignment:
Q  21 tcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    |||||||| || ||||||||||||| |||| ||||  |||||||||||| ||| | |||  |||| |||||||| |||||||    
T  40019938 tcctaaatcaagtgagtcatttgttcattttacactgattaagaaaaatgtataagtgaatgagagagaaaaattgttttaa 40019857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 48242633 - 48242662
Alignment:
Q  135 tatcataaatgtaaagtggaatatattgaa 164  Q
    ||||||||||||||||||||||||||||||    
T  48242633 tatcataaatgtaaagtggaatatattgaa 48242662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 32348368 - 32348316
Alignment:
Q  50 tcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||||||||| |||| ||| ||||| ||||| |||||||| |||||||    
T  32348368 tcacacatattaagacaaatgtataaatgaaggagagagaaaaatggttttaa 32348316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 51848654 - 51848702
Alignment:
Q  54 acatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||||| |||| ||| ||||| ||||| ||||||||||||||||    
T  51848654 acatattaagataaatgtataaatgatggagatagaaaaatagttttaa 51848702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 52432464 - 52432348
Alignment:
Q  48 tttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgta 147  Q
    ||||||||| ||||||| |||| ||| ||||| | ||| ||||||||  |||||| |  | |||| ||||||  ||||| |||  | || ||||||||||    
T  52432464 tttcacacacattaagacaaatgtataaatgaagaagagagaaaaatgattttaagtgctcttgttaagtattgatgcattctttactaccataaatgta 52432365  T
Q  148 aagtggaatatattgaa 164  Q
    ||||| |||||||||||    
T  52432364 aagtgaaatatattgaa 52432348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 39171700 - 39171579
Alignment:
Q  42 tgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcata 141  Q
    |||| ||||||||| |||||| |||||||||| ||||| ||||| |||||||| ||||||| || |||||| ||||||  ||||| | || | |||||||    
T  39171700 tgttcatttcacacctattaa-aaaaatatataaatgaaggagagagaaaaatggttttaagtacttttgttaagtattgatgcattatctactatcata 39171602  T
Q  142 aatgtaaagtggaatatattgaa 164  Q
    |||| ||||||||||||||||||    
T  39171601 aatgcaaagtggaatatattgaa 39171579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 42412312 - 42412454
Alignment:
Q  22 cctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatca 121  Q
    |||||||||| |||| |||||| | ||||||||||||||||||||||| ||| | |||  |||| |||||||||||||||| |  | |||| |  |||      
T  42412312 cctaaattaagtgagccatttgctcatttcacacatattaagaaaaatgtataagtgaatgagagagaaaaatagttttaagtgctcttgtcatatattg 42412411  T
Q  122 atgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| |||| ||||||||||||| ||||||||||||||||||    
T  42412412 gtgcattctccattatcataaatgcaaagtggaatatattgaa 42412454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 5392222 - 5392085
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| |||| |||||| | ||||||||| |||||||| |||| ||| ||||| ||||| |||||||| ||||||| |  |||||| ||||||   ||||    
T  5392222 attaactgagccatttgctcatttcacacctattaagacaaatgtataaatgaaggagagagaaaaatggttttaagtgcttttgtcaagtattggtgca 5392123  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| | ||||||||||| ||||||||||||||||||    
T  5392122 ttctccactatcataaatgcaaagtggaatatattgaa 5392085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 5962423 - 5962544
Alignment:
Q  43 gtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataa 142  Q
    ||||||||||||||||||||| ||||| ||| ||||| ||||| |||||||  ||||||| |  |||||| ||||||   |||| |||| | ||| ||||    
T  5962423 gtttatttcacacatattaaggaaaatgtataaatgaaggagatagaaaaaacgttttaagtgcttttgttaagtattggtgcattctccactattataa 5962522  T
Q  143 atgtaaagtggaatatattgaa 164  Q
    ||| ||||||||||||||||||    
T  5962523 atgcaaagtggaatatattgaa 5962544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 44790376 - 44790493
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| |||||||| |||| ||| ||||| ||||| |||||||||||||||| |    |||| ||||||   |||| |||| | ||||||||||||    
T  44790376 atttcacacgtattaagacaaatgtataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccactatcataaatgt 44790475  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  44790476 aaagtggaatatattgaa 44790493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 33190864 - 33190980
Alignment:
Q  48 tttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgta 147  Q
    ||||||||||||||||| |||| ||| ||||| | ||| ||||||||  |||||| | || |||| |||||| |||||| |||| | ||||||||||| |    
T  33190864 tttcacacatattaagacaaatgtataaatgaagaagagagaaaaatgattttaagtgttcttgttaagtattaatgcattctccactatcataaatgca 33190963  T
Q  148 aagtggaatatattgaa 164  Q
     ||||||||||||||||    
T  33190964 tagtggaatatattgaa 33190980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 38252391 - 38252509
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaa-tagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatg 145  Q
    ||||||||| ||||||||||||| ||| ||||| ||||| ||||||| ||||||||| |    |||| |||||| | |||| |||| | | |||||||||    
T  38252391 atttcacacgtattaagaaaaatgtataaatgaaggagagagaaaaaatagttttaagtgcacttgttaagtattagtgcattctccactgtcataaatg 38252490  T
Q  146 taaagtggaatatattgaa 164  Q
    |||||||||||||||||||    
T  38252491 taaagtggaatatattgaa 38252509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 22324909 - 22325026
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||  ||||||||||||| ||| ||||| ||||| ||||||||| |||||| | |  |||| || ||| | |||| | || | ||||||||||||    
T  22324909 atttcacaagtattaagaaaaatgtataaatgaaggagagagaaaaataattttaagtgtacttgttaaatattagtgcattttccactatcataaatgt 22325008  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  22325009 aaagtggaatatattgaa 22325026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 31410562 - 31410679
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    |||||||||||||||||||||||  || ||||| ||||| ||||||| |||||||| | ||||||| || |||   |||| | |  | |||||||||||     
T  31410562 atttcacacatattaagaaaaattaataaatgaaggagagagaaaaacagttttaagtgtttttgttaaatattggtgcattatacactatcataaatgc 31410661  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  31410662 aaagtggaatatattgaa 31410679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 32241364 - 32241495
Alignment:
Q  33 tgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctca 132  Q
    |||||||||| ||  ||||||||||||||||| |||| ||| ||||| ||||| | ||||||  |||||| | || |||| ||||||  ||||| |||      
T  32241364 tgagtcattttttcttttcacacatattaagacaaatgtataaatgaaggagagataaaaatgattttaagtgttcttgttaagtattgatgcattcttc 32241463  T
Q  133 attatcataaatgtaaagtggaatatattgaa 164  Q
    | ||||||||||| ||||||||||||| ||||    
T  32241464 actatcataaatgcaaagtggaatataatgaa 32241495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 12653840 - 12653723
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||| ||| ||||| | ||| |||||||||||||||| |   ||||| || |||   |||| | || | ||| ||||||||    
T  12653840 atttcacacgtattaagaaaaatgtataaatgaagtagagagaaaaatagttttaagtgcgtttgttaaatattggtgcattatccactattataaatgt 12653741  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  12653740 aaagtggaatatattgaa 12653723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 7042938 - 7042875
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatga 79  Q
    |||| ||| |||||||||||||||||| || ||||||||||||| ||||||||| ||| |||||    
T  7042938 ctccgtcccaaattaaatgagtcatttattcatttcacacatatcaagaaaaatgtataaatga 7042875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 2349504 - 2349386
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaa-tagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatg 145  Q
    ||||||||  |||||| |||||| ||| ||||| ||||| ||||||| ||||||||| |   ||||| ||||||   |||| |||| | |||||||||||    
T  2349504 atttcacatgtattaaaaaaaatgtataaatgaaggagagagaaaaaatagttttaagtgcatttgttaagtatttgtgcattctccactatcataaatg 2349405  T
Q  146 taaagtggaatatattgaa 164  Q
    |||| ||||||||||||||    
T  2349404 taaattggaatatattgaa 2349386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 29615951 - 29615834
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||| ||| ||||| ||||| ||||||||| |||||| |    |||| ||||||   || | | || | | ||||||||||    
T  29615951 atttcacacgtattaagaaaaatgtataaatgaaggagagagaaaaataattttaaatgcacttgttaagtattggtgtactttccactgtcataaatgt 29615852  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  29615851 aaagtggaatatattgaa 29615834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 37219701 - 37219832
Alignment:
Q  33 tgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa---ttatttttgtgaagtatcaatgcagtc 129  Q
    |||||||||| || |||||||||||||||||| |||| ||| ||||| ||||| ||||| ||  ||||||   || || |||| ||||||   |||| ||    
T  37219701 tgagtcattttttcatttcacacatattaagacaaatgtataaatgaaggagagagaaatatgattttaagtgttgttgttgttaagtatgggtgcattc 37219800  T
Q  130 tcaattatcataaatgtaaagtggaatatatt 161  Q
    ||  ||||||||||| ||||||| ||||||||    
T  37219801 tcccttatcataaatataaagtgaaatatatt 37219832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 39416477 - 39416437
Alignment:
Q  33 tgagtcatttgtttatttcacacatattaagaaaaatatat 73  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  39416477 tgagtcatttgttcatttcacacgtattaagaaaaatatat 39416437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 40316523 - 40316598
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||||||||||| ||||||||| |||| |||||||||| ||  |||||  |||| | |||||| |||||||    
T  40316523 attaaatgagtcatttgcttatttcactcatactaagaaaaatgtacaaatgaatgagagaaaaaaatggttttaa 40316598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 7258314 - 7258376
Alignment:
Q  40 tttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    |||| ||||||||||| |||||| |||||||||| ||||| ||| | |||||||| |||||||    
T  7258314 tttgcttatttcacacttattaaaaaaaatatattaatgaaggaaagagaaaaatggttttaa 7258376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 7042829 - 7042792
Alignment:
Q  123 tgcagtctcaattatcataaatgtaaagtggaatatat 160  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7042829 tgcattctctattatcataaatgtaaagtggaatatat 7042792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 9014838 - 9014745
Alignment:
Q  65 aaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaagtggaatat 158  Q
    ||||||||| ||||| | ||| ||||||||  |||||| |  |||||| ||||||  ||||| |||| | ||||||||||| ||||||||||||    
T  9014838 aaaatatataaatgaagaagagagaaaaatgattttaagtgcttttgttaagtattgatgcattctccactatcataaatgcaaagtggaatat 9014745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 283
Target Start/End: Complemental strand, 27987684 - 27987655
Alignment:
Q  254 atgaaagtagtattaattatagttataatt 283  Q
    ||||||||||||||||||||||||||||||    
T  27987684 atgaaagtagtattaattatagttataatt 27987655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 283
Target Start/End: Complemental strand, 28044986 - 28044957
Alignment:
Q  254 atgaaagtagtattaattatagttataatt 283  Q
    ||||||||||||||||||||||||||||||    
T  28044986 atgaaagtagtattaattatagttataatt 28044957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 5878179 - 5878297
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatga--gggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaat 144  Q
    |||||||| | |||||||||| | ||| |||||  | |||| |||||||| ||||||| | | ||||| |||||| | | || ||| | |||||||||||    
T  5878179 atttcacatagattaagaaaagtgtataaatgaaagagagagagaaaaatggttttaaatgtctttgtcaagtattagttcattct-acttatcataaat 5878277  T
Q  145 gtaaagtggaatatattgaa 164  Q
    ||||||| ||||||||||||    
T  5878278 gtaaagtagaatatattgaa 5878297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 29730867 - 29730963
Alignment:
Q  64 aaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaagtggaatatat 160  Q
    |||||||||| ||||| ||||| |||||| | ||||||| | || |||| ||||||   |||| |||| | ||||||||||| ||||| ||||||||    
T  29730867 aaaaatatataaatgaaggagagagaaaagtggttttaagtgttcttgttaagtattggtgcattctccactatcataaatgcaaagtagaatatat 29730963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 36649645 - 36649693
Alignment:
Q  21 tcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaat 69  Q
    ||||||||||| | ||||||||||| |||| |||| |||||||||||||    
T  36649645 tcctaaattaagtaagtcatttgttcattttacacttattaagaaaaat 36649693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 23685112 - 23684995
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||| ||||||||||||||| ||| ||| | ||||| |||||| ||||||||| | ||||||| |||||| | |||| |||| | |||||||||||     
T  23685112 atttcacgcatattaagaaaaatgtataaataaaggagagagaaaattagttttaagtgtttttgttaagtattagtgcattctccactatcataaatgc 23685013  T
Q  147 aaagtggaatatattgaa 164  Q
    |||||| |||||||||||    
T  23685012 aaagtgaaatatattgaa 23684995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 28527138 - 28527000
Alignment:
Q  26 aattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgc 125  Q
    |||||| ||||||||||| | ||||||||||||||||||||||| ||| ||||| ||||||| |||||| ||||||| |  | |||| ||||||   |||    
T  28527138 aattaactgagtcatttgctcatttcacacatattaagaaaaatgtataaatgaaggagaaaaaaaaatggttttaagtgctcttgttaagtattcgtgc 28527039  T
Q  126 agtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    | |||  | || |||| |||||||||||| |||||||||    
T  28527038 attcttcactaccatatatgtaaagtggactatattgaa 28527000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 30757529 - 30757639
Alignment:
Q  54 acatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaagtgg 153  Q
    |||||||||||||||| ||| ||||| ||||| |||||||||||||||| |    |||| |||||| |||||| | || | ||||||||||||||| |||    
T  30757529 acatattaagaaaaatgtataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattaatgcattttccactatcataaatgtaaattgg 30757628  T
Q  154 aatatattgaa 164  Q
    |||||||||||    
T  30757629 aatatattgaa 30757639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 15859300 - 15859371
Alignment:
Q  48 tttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtat 119  Q
    ||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||| || |||||| ||||||    
T  15859300 tttcacacatattaagacaaatatataaatgaaggagagagaaaaatagttttaagtacttttgttaagtat 15859371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 28108329 - 28108446
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||  ||| ||||| ||||| |||||||||||||||| |    |||| ||||||   |||| |||| | ||||||| ||||    
T  28108329 atttcacacgtattaagaaaaaattataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccactatcatacatgt 28108428  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  28108429 aaagtggaatatattgaa 28108446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 28925802 - 28925919
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||| ||| ||| | ||||| |||||||||||||||| |    |||| ||||||  ||||| |||| | |||||||| |||    
T  28925802 atttcacacgtattaagaaaaatgtataaataaaggagagagaaaaatagttttaagtgcacttgttaagtattgatgcattctccactatcataattgt 28925901  T
Q  147 aaagtggaatatattgaa 164  Q
    |||||| |||||||||||    
T  28925902 aaagtgaaatatattgaa 28925919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 36103235 - 36103372
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    |||||||| ||||||| || |||||| |  ||||||||||||| ||  ||||| ||||| ||||||||  |||||| | || |||| ||||||| |||||    
T  36103235 attaaatgggtcatttattcatttcatatgtattaagaaaaatgtacaaatgaaggagagagaaaaatgattttaagtgttcttgttaagtatcgatgca 36103334  T
Q  127 gtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
     |||| | |||||| ||| |||| ||||||||||||||    
T  36103335 ttctccactatcatgaatataaaatggaatatattgaa 36103372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 565262 - 565135
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| |||| |||||| |||||| |||||| ||||||||||| |||  |||| ||||||||||||||  |||||| | || |||| ||||||   ||||    
T  565262 attaactgagccatttgcttattttacacattttaagaaaaatgtatatatgaaggagaaagaaaaatgattttaagtgttcttgttaagtattggtgca 565163  T
Q  127 gtctcaattatcataaatgtaaagtgga 154  Q
     |||| | ||||||||||| ||||||||    
T  565162 ttctccactatcataaatgcaaagtgga 565135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 11726666 - 11726793
Alignment:
Q  37 tcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaatta 136  Q
    ||||||| | |||| |||| |||||| |||||| |||  |||| ||||| |||||||||||||||| || | |||| | |||| |||||| |||| | ||    
T  11726666 tcatttgctcatttaacacgtattaacaaaaatgtatagatgaaggagagagaaaaatagttttaagtactattgttatgtattaatgcattctccacta 11726765  T
Q  137 tcataaatgtaaagtggaatatattgaa 164  Q
    |||||| || ||||| ||||||||||||    
T  11726766 tcataattgcaaagtagaatatattgaa 11726793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 5211903 - 5212029
Alignment:
Q  38 catttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattat 137  Q
    ||||| || |||||||||||||||| | |||| ||| ||||| | |||  ||||||||||||||| |  | |||| ||||||   |||| | |||| |||    
T  5211903 cattttttcatttcacacatattaaaacaaatgtataaatgaagaagagggaaaaatagttttaagtgctcttgttaagtatttgtgcattatcaactat 5212002  T
Q  138 cataaatgtaaagtggaatatattgaa 164  Q
    |||||||| ||||||||||||||||||    
T  5212003 cataaatgcaaagtggaatatattgaa 5212029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 43950381 - 43950519
Alignment:
Q  26 aattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgc 125  Q
    |||||| | ||||||||  | ||||||||| |||||| |||||| ||| | |||  |||| |||||||||||||||| | ||||||| ||||||  |||     
T  43950381 aattaagtaagtcatttactcatttcacacttattaaaaaaaatgtataagtgaaagagagagaaaaatagttttaaatgtttttgttaagtattgatgt 43950480  T
Q  126 agtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    | | || |||| |||||||| ||||| ||||||||||||    
T  43950481 attttccattaacataaatgcaaagtagaatatattgaa 43950519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 41436231 - 41436115
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||||||||||||||||| ||| |||||   ||| |||||| || |||||| | ||||||| ||||||  ||| | |||  | |||||||||||     
T  41436231 atttcacacatattaagaaaaatgtataaatgaattagagagaaaa-taattttaagtgtttttgttaagtattgatgtattcttcactatcataaatgc 41436133  T
Q  147 aaagtggaatatattgaa 164  Q
    ||||||||||||||||||    
T  41436132 aaagtggaatatattgaa 41436115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 10069516 - 10069656
Alignment:
Q  24 taaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaat 123  Q
    |||||||| |||||| |||| | |||||||||  |||||||||||||||| | |||  |||| | ||||||  |||||| || |||||| ||||||   |    
T  10069516 taaattaagtgagtcttttgctcatttcacactcattaagaaaaatatataagtgaaagagagataaaaatgattttaagtacttttgtcaagtatttgt 10069615  T
Q  124 gcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    ||| |  | ||||||||||||| ||||| ||||||||||||    
T  10069616 gcatttaccattatcataaatgcaaagtcgaatatattgaa 10069656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 40965167 - 40965112
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||||    
T  40965167 atttcacacgtattaagaaaaatgtataaatgaaggagagagaaaaatagttttaa 40965112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 2756827 - 2756713
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    ||||||||| ||||||||||||| ||| ||||| | ||| ||||||||  |||||| |  | |||| |||||| | |||| |  | ||||||||||||||    
T  2756827 atttcacacttattaagaaaaatgtattaatgaagaagagagaaaaattattttaagtgctcttgtcaagtattagtgcatttaccattatcataaatgt 2756728  T
Q  147 aaagtggaatatatt 161  Q
    ||||| |||||||||    
T  2756727 aaagtagaatatatt 2756713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 31545952 - 31546086
Alignment:
Q  27 attaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgca 126  Q
    ||||| ||| ||||||| | |||||||| ||||||| |||||| ||| ||||| |||||| ||||| | ||||||| |  | |||| || |||  |||||    
T  31545952 attaagtgaatcatttgctcatttcacatatattaaaaaaaatgtataaatgaaggagaaggaaaagtggttttaagtgatcttgttaaatattgatgca 31546051  T
Q  127 gtctcaattatcataaatgtaaagtggaatatatt 161  Q
     |||| | ||||| ||||| |||||||||||||||    
T  31546052 ctctccactatcacaaatgcaaagtggaatatatt 31546086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 20027072 - 20027221
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatag-ttttaattatttttgtga 114  Q
    |||| ||||| ||||| ||||| ||||| | |||||| |||||||||||||| ||||| |  ||  |||| |||||||||| |||||| | ||||||| |    
T  20027072 ctccgtcctagattaagtgagttatttgctcatttcagacatattaagaaaagtatataagcgaatgagagagaaaaatagtttttaagtgtttttgtca 20027171  T
Q  115 agtatcaatgcagtctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    |||||   |||| || | ||||||||||||  ||||||||  ||||||||    
T  20027172 agtattgctgcattcaccattatcataaatacaaagtggaggatattgaa 20027221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 45464138 - 45464191
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaat 69  Q
    |||| ||| ||||||| ||||||||||| | |||||||||||||||||||||||    
T  45464138 ctccgtcccaaattaagtgagtcatttgctcatttcacacatattaagaaaaat 45464191  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 10394208 - 10394309
Alignment:
Q  16 ctccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaa 115  Q
    |||||||| ||||||| |||   ||||||| |||||||||||  |||||||||| ||| || || ||||| ||||||||| |||||| | ||||||| ||    
T  10394208 ctccatcccaaattaactgaactatttgttcatttcacacat--taagaaaaatgtataaaagaaggagagagaaaaataattttaaatgtttttgttaa 10394305  T
Q  116 gtat 119  Q
    ||||    
T  10394306 gtat 10394309  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 883078 - 883159
Alignment:
Q  18 ccatcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttt 99  Q
    |||||| ||| ||| |||| |||||||| ||||||||||| ||||||||| | ||| | |||  ||||||||||||| ||||    
T  883078 ccatcccaaaataattgagccatttgttcatttcacacattttaagaaaagtgtataagtgaaagagaaagaaaaatggttt 883159  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 3100552 - 3100439
Alignment:
Q  48 tttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgta 147  Q
    |||| ||| |||||| | |||||||| ||||| ||||| ||||||||  |||||| |  | |||| ||||||   |||| |||| | ||||||||||| |    
T  3100552 tttcgcacgtattaaaacaaatatataaatgaaggagagagaaaaatgattttaagtgatcttgttaagtattgctgcattctccactatcataaatgca 3100453  T
Q  148 aagtggaatatatt 161  Q
    ||||||||||||||    
T  3100452 aagtggaatatatt 3100439  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 8550596 - 8550713
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgt 146  Q
    |||||||||| ||| |||||||| ||| | |||  |||| |||||| | ||||||| | || |||| ||||||   |||| |||| |||||||||||||     
T  8550596 atttcacacacatttagaaaaatgtataagtgaaagagagagaaaagtggttttaagtgttcttgtcaagtatttgtgcattctccattatcataaatgc 8550695  T
Q  147 aaagtggaatatattgaa 164  Q
    |||||  |||||||||||    
T  8550696 aaagtctaatatattgaa 8550713  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 283
Target Start/End: Original strand, 8550723 - 8550752
Alignment:
Q  254 atgaaagtagtattaattatagttataatt 283  Q
    ||||||||||||||||||||||||||||||    
T  8550723 atgaaagtagtattaattatagttataatt 8550752  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Complemental strand, 9472447 - 9472418
Alignment:
Q  255 tgaaagtagtattaattatagttataattg 284  Q
    ||||||||||||||||||||||||||||||    
T  9472447 tgaaagtagtattaattatagttataattg 9472418  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 18181290 - 18181323
Alignment:
Q  250 aataatgaaagtagtattaattatagttataatt 283  Q
    ||||||||||||||||||||||| ||||||||||    
T  18181290 aataatgaaagtagtattaattagagttataatt 18181323  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 33602355 - 33602408
Alignment:
Q  295 ttaatattgaattgaaa-gtgaaataaatcaattattttaaaacaatatttttt 347  Q
    ||||||||| ||||||| |||||||| |||| |||||||| |||||||||||||    
T  33602355 ttaatattgtattgaaaagtgaaatagatcagttattttagaacaatatttttt 33602408  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 37529006 - 37529051
Alignment:
Q  28 ttaaatgagtcatttgtttatttcacacatattaagaaaaatatat 73  Q
    |||| ||||||||||||| ||||||||| |||||| ||||||||||    
T  37529006 ttaactgagtcatttgttcatttcacacttattaaaaaaaatatat 37529051  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 39547971 - 39547890
Alignment:
Q  21 tcctaaattaaatgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||||| |||||||||||||  ||||| |  |||||||||||||| || | | |  |||||||||||||| ||||||    
T  39547971 tcctaaattaagtgagtcatttgttcttttcatatttattaagaaaaatacataagtaaaagagaaagaaaaataattttaa 39547890  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 41365887 - 41365831
Alignment:
Q  33 tgagtcatttgtttatttcacacatattaagaaaaatata--tgaatgagggagaaa 87  Q
    ||||| ||||||| ||||||||||||||||||||| ||||  |||||||| ||||||    
T  41365887 tgagttatttgttcatttcacacatattaagaaaattataagtgaatgagagagaaa 41365831  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 3123804 - 3123744
Alignment:
Q  42 tgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    |||| ||||||||||||||||||||||| ||| | ||| | ||| ||||||||| ||||||    
T  3123804 tgttcatttcacacatattaagaaaaatgtataactgaagtagagagaaaaataattttaa 3123744  T

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Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 18181168 - 18181284
Alignment:
Q  48 tttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgta 147  Q
    ||||||||| |||||||||| | ||| | |||| |||| |||||||| ||||||| |  |||||| | ||||   |||| |||| | ||||||||||| |    
T  18181168 tttcacacagattaagaaaagtgtataagtgagagagagagaaaaatggttttaagtgcttttgttatgtattggtgcattctccactatcataaatgca 18181267  T
Q  148 aagtggaatatattgaa 164  Q
    |||| |||||| |||||    
T  18181268 aagtagaatattttgaa 18181284  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 19515909 - 19515877
Alignment:
Q  252 taatgaaagtagtattaattatagttataattg 284  Q
    ||||||||||||||||||||| |||||||||||    
T  19515909 taatgaaagtagtattaattagagttataattg 19515877  T

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Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 39095703 - 39095667
Alignment:
Q  128 tctcaattatcataaatgtaaagtggaatatattgaa 164  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  39095703 tctccattatcataaatgcaaagtggaatatattgaa 39095667  T

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Target: scaffold0058 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 14611 - 14492
Alignment:
Q  45 ttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaat 144  Q
    ||||||||||| ||||||||||||| ||| ||||| || || | ||||||||||||||||    |||  ||||||  ||||| |||| | | ||||||||    
T  14611 ttatttcacacgtattaagaaaaatgtataaatgaaggggagataaaaatagttttaattgcacttgctaagtattgatgcattctccactgtcataaat 14512  T
Q  145 gtaaagtggaatatattgaa 164  Q
    ||||||||||||||||||||    
T  14511 gtaaagtggaatatattgaa 14492  T

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Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 9511 - 9617
Alignment:
Q  53 cacatattaagaaaaata-tatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgtaaagt 151  Q
    |||||||||||||||| | ||| ||||| ||||| |||||||| ||||||| |  | |||| |||||| |||| | |||| ||||||||||||| |||||    
T  9511 cacatattaagaaaaaaagtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattaatgtattctccattatcataaatgcaaagt 9610  T
Q  152 ggaatat 158  Q
    |||||||    
T  9611 ggaatat 9617  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 229974 - 229859
Alignment:
Q  48 tttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagtatcaatgcagtctcaattatcataaatgta 147  Q
    |||||||| |||||||| |||| ||| ||||| ||||| |||||||| ||||||| |  | |||| ||||||   |||| |||| ||||||||||||| |    
T  229974 tttcacacgtattaagacaaatgtataaatgaaggagatagaaaaat-gttttaagtgctcttgttaagtattggtgcattctccattatcataaatgca 229876  T
Q  148 aagtggaatatattgaa 164  Q
    |||||| ||||||||||    
T  229875 aagtggtatatattgaa 229859  T

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Target: scaffold0227 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 9019 - 8949
Alignment:
Q  47 atttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaattatttttgtgaagt 117  Q
    ||||||||||||||||||||||| ||| ||||| | ||| ||||||||| |||||| | ||||||| ||||    
T  9019 atttcacacatattaagaaaaatgtataaatgaagaagagagaaaaataattttaagtgtttttgttaagt 8949  T

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Target: scaffold0364 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 13277 - 13346
Alignment:
Q  33 tgagtcatttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaatagttttaa 102  Q
    ||||||||||| | |||||||||||||||| |||| | ||| |||||| |||||| |||| |||||||||    
T  13277 tgagtcatttgatcatttcacacatattaaaaaaactgtataaatgagagagaaaaaaaattagttttaa 13346  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 54842 - 54887
Alignment:
Q  21 tcctaaattaaatgagtcatttgtttatttcacacatattaagaaa 66  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||    
T  54842 tcctaaattaagtgagctatttgtttatttcacacatattaagaaa 54887  T

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Target: scaffold0034 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 98987 - 98931
Alignment:
Q  38 catttgtttatttcacacatattaagaaaaatatatgaatgagggagaaagaaaaat 94  Q
    |||||||| ||||||||||||||||||||||| ||| |||||  |||| ||||||||    
T  98987 catttgttcatttcacacatattaagaaaaatgtataaatgaatgagagagaaaaat 98931  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 26387 - 26358
Alignment:
Q  135 tatcataaatgtaaagtggaatatattgaa 164  Q
    ||||||||||||||||||||||||||||||    
T  26387 tatcataaatgtaaagtggaatatattgaa 26358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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