View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_high_15 (Length: 358)
Name: NF17909_high_15
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 2676631 - 2676305
Alignment:
| Q |
16 |
atcaaacaacaagaacaaaggttacgaacgttcaacatcattcgacgatgacacagccatgttcatcaacatgtcacaagaattaagagaagaaggtaac |
115 |
Q |
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| T |
2676631 |
atcaaacaacaagaacaaaggttacgaacgttcaacatcattcgacgatgacacagccatgttcatcaacatgtcacaagaattaagagaagaaggtaac |
2676532 |
T |
|
| Q |
116 |
aaacttttcttccnnnnnnnngacaacgaaggagctatgttaaagtacgaaaaagccctcaaactcttacccaaaaaccacatagatgttgcacatcttc |
215 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2676531 |
aaacttttcttccaaaaaaaagacaacgaaggagctatgttaaagtacgaaaaagctctcaaactcttacccaaaaaccacatagatgttgcacatcttc |
2676432 |
T |
|
| Q |
216 |
acaccaacatggccatgtgttatatgcaattgggtctcggcgaatatcctcgagctattaacgagtgcaatcttgctctgcaagtttcgccgaggtatag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2676431 |
acaccaacatggccatgtgttatatgcaattgggtctcggcgaatatcctcgagctattaacgagtgcaatcttgctctgcaagtttcgccgaggtatag |
2676332 |
T |
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| Q |
316 |
taaagctcttcttagaagagctaagtg |
342 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
2676331 |
taaagctcttcttagaagagctaagtg |
2676305 |
T |
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