View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_high_27 (Length: 262)
Name: NF17909_high_27
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 40846690 - 40846908
Alignment:
| Q |
29 |
caacgcaactttataatcttgtcagctgattcgttttacctgcattgttaggtttgcactttgcagcagtaagttacaatccaatattggttgctcagtt |
128 |
Q |
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| T |
40846690 |
caacgcaactttataatcttgtcagctgattcgttttacctgcattgttaggtttgcactttgcagtagtaagttacaagccaatattggttgctcagtt |
40846789 |
T |
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| Q |
129 |
ctaaggtactatcgaaggaaaaggacttcaagaaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaac |
228 |
Q |
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| T |
40846790 |
ctaaggtactatcgaaggaaaaggacttcaagaaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaac |
40846889 |
T |
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| Q |
229 |
aaatgtattgaacaaaaac |
247 |
Q |
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| T |
40846890 |
aaatgtattgaacaaaaac |
40846908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 45401352 - 45401278
Alignment:
| Q |
161 |
aaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgta |
235 |
Q |
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|||||||||| |||||||||| | ||||||||||||| ||||||||| ||| || |||||||||||| ||||||| |
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| T |
45401352 |
aaactatttatatgtttgacaacaataactaattcatatgaaacacacacagaaaagttaagcttaaaaaatgta |
45401278 |
T |
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