View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_high_32 (Length: 241)
Name: NF17909_high_32
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_high_32 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 9248525 - 9248691
Alignment:
| Q |
26 |
tagaaaatgtacattggattgaattgagaaagagagaaaaatattggattgaatannnnnnnggcattgtttgttattaatttaaaattatgcactttta |
125 |
Q |
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| T |
9248525 |
tagaaaatgtacattggattgaattgagaaagagagaaaaatattggattgaatatttttttggcattgtttgttattaatttaaaattatgcactttta |
9248624 |
T |
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| Q |
126 |
agccattttatatttactaaagctaaatttaagaaacatgtaaatttctgggtgccaacaaaacaca |
192 |
Q |
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| T |
9248625 |
agccattttatatttactaaagctaaatttaagaaacatgtaaatttctgggtgccaacaaaacaca |
9248691 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 9244402 - 9244453
Alignment:
| Q |
26 |
tagaaaatgtacattggattgaattgagaaagagagaaaaatattggattga |
77 |
Q |
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| T |
9244402 |
tagaaaatgtacattggattgaattcagaatgagaaaaagatattggattga |
9244453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 5362 - 5311
Alignment:
| Q |
26 |
tagaaaatgtacattggattgaattgagaaagagagaaaaatattggattgaa |
78 |
Q |
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| T |
5362 |
tagaaaatgtacattggattgaattcagaatgaga-aaaagtattggattgaa |
5311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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