View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_high_34 (Length: 238)
Name: NF17909_high_34
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47365388 - 47365166
Alignment:
| Q |
1 |
tgcaacctgagcagcagtaaaagcagcttcagctgctgcagctgaggcaatagcaactgttaaagcctcaggttcacataatcttgtttcttttaatggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47365388 |
tgcaacctgagcagcagtaaaagcagcttcagctgctgcagctgaggcaatagcaactgttaaagcctcaggttcacataatcttgtttcttttaatggt |
47365289 |
T |
|
| Q |
101 |
ggtggtgcttcaatcgaaggaaatctcttgttctttagcctcccaaatacacacttc-tttcttttctccttctgaaaacaggttattgtctcgtcaaca |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47365288 |
ggtggtgcttcaatcgaaggaaatctcttgttctttagcctcccaaatacacacttcttttcttttctccttctgaaaacaggttattgtctcgtcaaca |
47365189 |
T |
|
| Q |
200 |
ccacaatcttaacttaaaaaagt |
222 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
47365188 |
ccacaatcttaacttaaaaaagt |
47365166 |
T |
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