View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17909_high_37 (Length: 228)

Name: NF17909_high_37
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17909_high_37
NF17909_high_37
[»] chr6 (10 HSPs)
chr6 (1-228)||(1832035-1832262)
chr6 (7-228)||(1827253-1827460)
chr6 (7-228)||(6465044-6465265)
chr6 (70-228)||(1842034-1842192)
chr6 (7-228)||(6473289-6473510)
chr6 (133-228)||(1845889-1845983)
chr6 (7-200)||(1839162-1839355)
chr6 (36-228)||(6526109-6526304)
chr6 (7-228)||(6457084-6457305)
chr6 (7-165)||(1828190-1828348)
[»] chr1 (1 HSPs)
chr1 (154-228)||(35244271-35244345)
[»] chr7 (3 HSPs)
chr7 (7-77)||(46383132-46383202)
chr7 (180-215)||(9665567-9665602)
chr7 (156-228)||(46383276-46383349)
[»] chr4 (1 HSPs)
chr4 (180-215)||(13536591-13536626)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 1832262 - 1832035
Alignment:
Q  1 tacctgtcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1832262 taccagtcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcg 1832163  T
Q  101 tagtttacaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggctta 200  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1832162 tagtttacaaagctcaaaacatcattgacgtgcgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggctta 1832063  T
Q  201 tgctttctaccccaaattggatcaatct 228  Q
    | || |||||||||||||||||||||||    
T  1832062 tactctctaccccaaattggatcaatct 1832035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 1827460 - 1827253
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||| |||| ||||| ||||| |||||||    
T  1827460 tcaaggctgcagaataatatgcattcattgcttcactagcgctctcttgatttcttccatcagtgaattcagttagccctccagcccaagagtgtagttt 1827361  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgcttt 206  Q
    ||||||| ||||| | |              || ||||| |||||||||||| |||||||||||||  |||||||||||||||||||||||||||  |||    
T  1827360 acaaagcacaaaatacc--------------ttagagttcgaatttctactcgaggtcataaaatcggcaatgagtgaataggcttgaggcttatatttt 1827275  T
Q  207 ctaccccaaattggatcaatct 228  Q
    ||||||||||||| ||||||||    
T  1827274 ctaccccaaattgaatcaatct 1827253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 6465044 - 6465265
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    |||| ||||| ||||| ||||||||||  |||||||||||  ||||||| |||||||||||   ||| ||| ||| |||| | ||| | ||  | | |||    
T  6465044 tcaaagctgctgaatagtatgcattcacagcttcactagtactctcttgatttcttccatctccgaactcagttaaccctccggcccacgaatgcaattt 6465143  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgcttt 206  Q
    | |||| || ||||| ||| |||| |||||||| ||||| | |||||| |||||| ||||||||||  | ||||||||||| ||||||||||||| |||     
T  6465144 aaaaagatcgaaacaccttagacgggtgtaattcgagttcggatttctgctcaagttcataaaatcagccatgagtgaataagcttgaggcttatacttc 6465243  T
Q  207 ctaccccaaattggatcaatct 228  Q
    ||||||||||||||||||||||    
T  6465244 ctaccccaaattggatcaatct 6465265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 1842192 - 1842034
Alignment:
Q  70 tgaattcacttacccctacagcctaagagcgtagtttacaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaa 169  Q
    |||||||| ||| |||| ||||  ||||| ||| ||||||||| || ||||| ||| |||  |||| ||| |||||||||||||||||||||||||||||    
T  1842192 tgaattcagttagccctccagctcaagagtgtaatttacaaagatcgaaacaccttagacacgtgtcattagagtttgaatttctactcaaggtcataaa 1842093  T
Q  170 atcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatct 228  Q
    |||||  ||||||||||   |||||| || || |||| || ||||||||||||||||||    
T  1842092 atccttcatgagtgaatccacttgagtctcatactttgtatcccaaattggatcaatct 1842034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 6473510 - 6473289
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    |||| ||||||||||| ||||||||||  |||||||||||  ||||||||||||||||||| |  || ||  ||| |||| | ||| ||||  | |||||    
T  6473510 tcaacgctgcagaatagtatgcattcacggcttcactagtactctcttggtttcttccatccgcaaactcggttaaccctccggcccaagaatgcagttt 6473411  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgcttt 206  Q
      |||| |||||||| |||  | | || |||||||| || || ||| | ||||||||||||||||| || ||||||| |||||||||||||||||  ||     
T  6473410 gtaaagatcaaaacaccttaaaggagtataatttgaattcgagtttttgctcaaggtcataaaatcttccatgagtgcataggcttgaggcttatatttc 6473311  T
Q  207 ctaccccaaattggatcaatct 228  Q
     ||||||||| |||||||||||    
T  6473310 ttaccccaaactggatcaatct 6473289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 1845983 - 1845889
Alignment:
Q  133 tgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatct 228  Q
    ||||||| ||||||||||||||||||| ||||||||||||  |||||||| |||||||||||||||||   |||| ||||||||||||||||||||    
T  1845983 tgtaattagagtttgaatttctactca-ggtcataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatct 1845889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 1839355 - 1839162
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    |||| |||| |||||| |||||||||| || |||||||||| | ||||| ||||| ||||||| ||| ||  ||| |||| | ||| ||||| ||| |||    
T  1839355 tcaaagctgaagaatagtatgcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaattt 1839256  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggctta 200  Q
    | |||| || ||||| ||| |||   ||||||| ||||| |||||||||||  ||||||||||||   ||||||||||||||| ||||||||||    
T  1839255 ataaagatctaaacaccttagacacatgtaattagagttcgaatttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggctta 1839162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 6526109 - 6526304
Alignment:
Q  36 gcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagtttacaaagctcaaaacatctttgacgtgtgt 135  Q
    |||||||| ||  ||||||| ||||||||||||||||||||  ||| |||| ||||| ||||| ||| |||| | || || ||||| ||| || | ||||    
T  6526109 gcttcactggtactctcttgatttcttccatcagtgaattctgttagccctccagcccaagagtgtaatttatacagatcgaaacaccttagatgcgtgt 6526208  T
Q  136 aat---ttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatct 228  Q
    |||   | | |||||||||||| ||||   ||||||||||  | ||||  ||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  6526209 aataactagggtttgaatttctgctcagattcataaaatcagccatgacagaataggcttgagacttatactttctaccccaaataggatcaatct 6526304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 6457084 - 6457305
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    |||| ||||||| ||| ||||||||||  |||||||||||  ||||||| ||||||||||| |  |||||  |||  ||| ||||| ||||  | | |||    
T  6457084 tcaatgctgcagcatagtatgcattcacagcttcactagtactctcttgatttcttccatctgcaaattcgattagtcctccagcccaagaatgaaattt 6457183  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgcttt 206  Q
    | |||| || ||||| |||  |||||| |||||||||||||| ||||| |  ||| |||  |||||  | ||||||||||| |||||||| |||| ||||    
T  6457184 ataaagatcgaaacaccttaaacgtgtataatttgagtttgattttcttcctaagttcaggaaatctgccatgagtgaataagcttgaggtttatacttt 6457283  T
Q  207 ctaccccaaattggatcaatct 228  Q
    || ||||||  |||||||||||    
T  6457284 cttccccaagctggatcaatct 6457305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 1828348 - 1828190
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    |||||||||| ||||| |||||||||| ||| ||||||||| ||||||| ||||| ||||||| ||||||  ||| |||| | ||| ||||| ||| |||    
T  1828348 tcaaggctgcggaatagtatgcattcactgcatcactagtgctctcttgatttctaccatcagcgaattctgttagccctccggcccaagagtgtaattt 1828249  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtca 165  Q
    | |||| || ||||| ||  |||  ||||||||   ||| || ||||||||||||||||    
T  1828248 ataaagatcgaaacacctcagacacgtgtaattattgttagagtttctactcaaggtca 1828190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 35244345 - 35244271
Alignment:
Q  154 tactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatct 228  Q
    |||||||| |||||||||| |  |||||||||||||||||||  |||| ||| ||||||||| ||||||||||||    
T  35244345 tactcaagttcataaaatctttcatgagtgaataggcttgagatttatacttcctaccccaagttggatcaatct 35244271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 46383132 - 46383202
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattca 77  Q
    |||| ||||||||||| ||||||||||  | |||||||||  ||| ||| |||||||||||||||||||||    
T  46383132 tcaaagctgcagaatagtatgcattcaaagtttcactagtactcttttgatttcttccatcagtgaattca 46383202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 9665602 - 9665567
Alignment:
Q  180 agtgaataggcttgaggcttatgctttctaccccaa 215  Q
    |||||||||||||||||||||| |||||||||||||    
T  9665602 agtgaataggcttgaggcttatactttctaccccaa 9665567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 46383276 - 46383349
Alignment:
Q  156 ctcaaggtcataaaatcctcaatgagtgaataggctt-gaggcttatgctttctaccccaaattggatcaatct 228  Q
    |||||| |||||| ||| || ||||||||||| |||| ||| ||||| ||| ||||||||||| ||||||||||    
T  46383276 ctcaagttcataatatcttccatgagtgaataagctttgagacttatacttcctaccccaaataggatcaatct 46383349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 13536626 - 13536591
Alignment:
Q  180 agtgaataggcttgaggcttatgctttctaccccaa 215  Q
    |||||||||||||||||||||| |||||||||||||    
T  13536626 agtgaataggcttgaggcttatactttctaccccaa 13536591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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