View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_high_39 (Length: 226)
Name: NF17909_high_39
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 2947534 - 2947341
Alignment:
| Q |
18 |
ctaattagatacttgtgtacctaattttccacattttctcaattagtacattgttaccatctgagttttaatcagctttaacaatttctctcatatgctt |
117 |
Q |
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| T |
2947534 |
ctaattagatacttgtgtacctaattttccacattttctcaattagtacattgttaccatctgagttttaatcagctttaacaatttctctcatatgctt |
2947435 |
T |
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| Q |
118 |
acgtccttcctcccctttgatccatgaatttgtaacaatttcatgcaggtacaacgtgatgagccgactgcccatttaacacccgcctcatatt |
211 |
Q |
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| T |
2947434 |
acgtccttcctcccctttgatccatgaatttgtaacaatttcatgtaggtacaacgtgatgagctgactgcccatttaacacccgcctcctatt |
2947341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 3350460 - 3350523
Alignment:
| Q |
111 |
tatgcttacgtccttcctcccctttgatccatgaatttgtaacaatttcatgcaggtacaacgt |
174 |
Q |
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| T |
3350460 |
tatgcttacatgcttcctcccctttgatccatgaatttgtaacaatttcatgtaggtaccacgt |
3350523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 3353307 - 3353347
Alignment:
| Q |
171 |
acgtgatgagccgactgcccatttaacacccgcctcatatt |
211 |
Q |
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| T |
3353307 |
acgtgatgagccgactgcccatttaacacccgcctcctatt |
3353347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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