View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_1 (Length: 811)
Name: NF17909_low_1
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 43547969 - 43548464
Alignment:
| Q |
18 |
agttgtgtatcctcacaactatgggtttatcccccgcactatttgcgaggatggtgaccccattgacgtcttagttattatgcaggtacctcatattgta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43547969 |
agttgtgtatcctcacaactatgggtttatcccccgcactatttgcgaggatggtgaccccattgacgtcttagttattatgcaggtacctcatattgta |
43548068 |
T |
|
| Q |
118 |
cccttcctttgcaaattaacttaccttgtgtgataatttcatatgaagataaaatctgcgctacatatttatgcaatcctgttcttaaatttggaatctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548069 |
cccttcctttgcaaattaacttaccttgtgtgataatttcatatgaagataaaatctgcgctacatatttatgcaatcctgttcttaaatttggaatctg |
43548168 |
T |
|
| Q |
218 |
ttattagttgttatgcgatttgcctagttcttcatcgaattccgaaaggaaacctgtatgtactgaaaatatcatcaaagttagatcatctaggatctag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548169 |
ttattagttgttatgcgatttgcctagttcttcatcgaattccgaaaggaaacctgtatgtactgaaaatatcatcaaagttagatcatctaggatctag |
43548268 |
T |
|
| Q |
318 |
cctccttataatgaaacttcatttatcaatattttgaactagagctcttgtacttttctttttccttttcaaaaatggattgtataataatagtcaacat |
417 |
Q |
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| T |
43548269 |
cctccttataatgaaacttcatttatcaatattttgaactagagctcttgtacttttctttttccttttcaaaaatggattgtataataatagtcaacat |
43548368 |
T |
|
| Q |
418 |
ctggctaactgtgatttcagatgcaagatgttggtgggtgtcaacattttaacgaatatatttagataatactaatatcttattaagaagtaatta |
513 |
Q |
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| T |
43548369 |
ctggctaactgtgatttcagatgcaagatgttggtgggtgtcaacattttaacgaatatatttagataatactaatatcttattaagaagtaatta |
43548464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 531 - 811
Target Start/End: Original strand, 43548455 - 43548735
Alignment:
| Q |
531 |
gaagtaattaatgaattttaaaatccttggcatatgaaaccttatcttttacttccaaggaggtgatcaaaatgtgcaaatgtgagtaaatttcaaaata |
630 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548455 |
gaagtaattaatgaatttaaaaatccttggcatatgaaaccttatcttttacttccaaggaggtgatcaaaatgtgcaaatgtgagtaaatttcaaaata |
43548554 |
T |
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| Q |
631 |
ttactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagtaagaagtcgacttcatctatctagactctagtattagtgc |
730 |
Q |
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| T |
43548555 |
ttactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagtaagaagtcgacttcatctatctagactctagtattagtgc |
43548654 |
T |
|
| Q |
731 |
attagatttgtctttactgctttggagcgctaattcttaattgtgttgaaacaggagccagttgttccaggttgctttctc |
811 |
Q |
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| T |
43548655 |
attagatttgtctttactgctttggagcgctaattcttaattgtgttgaaacaggagccagttgttccaggttgctttctc |
43548735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 29368215 - 29368480
Alignment:
| Q |
18 |
agttgtgtatcctcacaactatgggtttatcccccgcactatttgcgaggatggtgaccccattgacgtcttagttattatgcaggtacct-------ca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | || |
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| T |
29368215 |
agttgtgtatcctcacaactatgggtttatcccccgcactatttgtgaggatggtgaccccattgatgtcttagttattatgcaggtatttttgtttaca |
29368314 |
T |
|
| Q |
111 |
tattgtaccctt-cctttgcaaattaacttaccttgtgtgataatttcatatgaagataaaatctgcgctacatatttatgcaatcctgttcttaaattt |
209 |
Q |
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|||||| | ||| || |||||||||||||| | ||||||||||||| |||| |||||| |||| ||| | |||||||| |||||| ||||||| ||||| |
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| T |
29368315 |
tattgtccacttccccttgcaaattaacttgctttgtgtgataattccataagaagatcaaatgtgcacaacatatttgtgcaattctgttctcaaatta |
29368414 |
T |
|
| Q |
210 |
ggaatctgttattagttgttatgcgatttgcctagttcttcatcgaattccgaaaggaaacctgtatgt |
278 |
Q |
| |
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||| ||||||||||||||||| | ||||||| || ||||| ||||||| |||||||||||| |||| |
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| T |
29368415 |
ggattctgttattagttgttaaacaatttgcc---ttattcattgaattccaaaaggaaacctgcatgt |
29368480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 50900920 - 50901015
Alignment:
| Q |
126 |
ttgcaaattaacttaccttgtgtgataatttcatatgaagataaaatctgcgctacatatttatgcaatcctgttcttaaatttggaatctgttat |
221 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50900920 |
ttgcaaataaacttaccttgtgtgataatttcatatgaagatcaaatctgcactacatatttatgcaatcctgttcccaaatttggaatctgttat |
50901015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 396 - 500
Target Start/End: Original strand, 29368551 - 29368655
Alignment:
| Q |
396 |
attgtataataatagtcaacatctggctaactgtgatttcagatgcaagatgttggtgggtgtcaacattttaacgaatatatttagataatactaatat |
495 |
Q |
| |
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|||||||||||||||||||| |||||| | ||||||||||| |||||||| |||||||| | | || |||||||| ||||||||| ||| || ||| ||| |
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| T |
29368551 |
attgtataataatagtcaacttctggccagctgtgatttcaaatgcaagaagttggtggttcttaatattttaactaatatattttgatgattctagtat |
29368650 |
T |
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| Q |
496 |
cttat |
500 |
Q |
| |
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||||| |
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| T |
29368651 |
cttat |
29368655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 611 - 713
Target Start/End: Original strand, 50909815 - 50909917
Alignment:
| Q |
611 |
tgtgagtaaatttcaaaatattactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagtaagaagtcgacttcatctat |
710 |
Q |
| |
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||||||||||||| ||||||| || |||||||||||| | ||||||||||||| || |||||| |||||||||||||||| | | |||||||||||| |
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| T |
50909815 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctat |
50909914 |
T |
|
| Q |
711 |
cta |
713 |
Q |
| |
|
||| |
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|
| T |
50909915 |
cta |
50909917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 591 - 692
Target Start/End: Original strand, 29368751 - 29368851
Alignment:
| Q |
591 |
aggtgatcaaaatgtgcaaatgtgagtaaatttcaaaatattactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagt |
690 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |||| || || || ||||||||| | |||||||| ||||| |||| |||| ||||||||| |||| |
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| T |
29368751 |
aggtgttcaaaatgtgcaaatgtgagtaaattttaaaa-atggctactgtaatacaatttcacaataatacatggtaacacttcaaaaagaggatgaagt |
29368849 |
T |
|
| Q |
691 |
aa |
692 |
Q |
| |
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|| |
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|
| T |
29368850 |
aa |
29368851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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