View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17909_low_10 (Length: 559)

Name: NF17909_low_10
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17909_low_10
NF17909_low_10
[»] chr3 (1 HSPs)
chr3 (1-559)||(36424110-36424663)
[»] scaffold0051 (1 HSPs)
scaffold0051 (48-81)||(19551-19584)


Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 36424663 - 36424110
Alignment:
Q  1 agggttccatacagatattcttggtctggtacttggttcatgtgatcataggttgttcctttcaccatcaagataccacttagtccaacctacatcagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36424663 agggttccatacagatattcttggtctggtacttggttcatgtgatcataggttgttcctttcaccatcaagataccacttagtccaacctacatcagaa 36424564  T
Q  101 acaaaatttgatgtgagcttaagttatttaatacaatgagacaaaacatgtagcatcaatctataatataaatatttgtccaacctcttaccttaaacca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  36424563 acaaaatttgatgtgagcttaagttatttaatacaatgagacaaaacatgtagcatcaatctataa-----atatttgtccaacctcttaccttaaacca 36424469  T
Q  201 tcaatctacaattcaacttgtccannnnnnnagtgattacaatttataattgaaatacattgcatatgtcacataaattctggtgtcattaaattaaata 300  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36424468 tcaatctacaattcaacttgtccatttttttagtgattacaatttataattgaaatacattgcatatgtcacataaattctggtgtccttaaattaaata 36424369  T
Q  301 gtactccaaaactatgtcagtgtaacttgatgaatagtttattgtacacactccaaaactatggacaagatagtctcctctctacagagattattattgg 400  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36424368 gtactccaaaactatgtcaatgtaacttgatgaatagtttattgtacacactccaaaactatggacaagatagtctcctctctacagagattattattgg 36424269  T
Q  401 aagtattaatctcagcacaattccctaaacaagaatatttttcaaactaaataaacttaattttcaacacctaccttggatctgattagcccatctgttt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36424268 aagtattaatctcagcacaattccctaaacaagaatatttttcaaactaaataaacttaattttcaacacctaccttggatctgattagcccatctgttt 36424169  T
Q  501 gaaattcccaatccatgatatagtcatagtttgccactgctgctgccattctaaccacc 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36424168 gaaattcccaatccatgatatagtcatagtttgccactgctgctgccattctaaccacc 36424110  T

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Target: scaffold0051 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 19551 - 19584
Alignment:
Q  48 ataggttgttcctttcaccatcaagataccactt 81  Q
    ||||||||||||||||||||||||||||||||||    
T  19551 ataggttgttcctttcaccatcaagataccactt 19584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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