View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17909_low_11 (Length: 497)

Name: NF17909_low_11
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17909_low_11
NF17909_low_11
[»] chr3 (5 HSPs)
chr3 (186-497)||(30413552-30413866)
chr3 (8-117)||(30413937-30414046)
chr3 (72-118)||(19993723-19993769)
chr3 (72-114)||(35656257-35656299)
chr3 (77-121)||(52398023-52398066)
[»] chr6 (4 HSPs)
chr6 (14-118)||(35189914-35190018)
chr6 (24-118)||(22469311-22469404)
chr6 (72-118)||(26265189-26265235)
chr6 (73-114)||(30714559-30714600)
[»] chr2 (3 HSPs)
chr2 (10-122)||(12758837-12758949)
chr2 (72-118)||(39879778-39879824)
chr2 (72-118)||(26646672-26646718)
[»] chr4 (6 HSPs)
chr4 (26-120)||(29798858-29798952)
chr4 (64-118)||(54782981-54783035)
chr4 (72-118)||(35042909-35042955)
chr4 (72-118)||(24539978-24540024)
chr4 (72-118)||(51325346-51325392)
chr4 (77-121)||(35430185-35430228)
[»] chr8 (4 HSPs)
chr8 (72-118)||(108528-108574)
chr8 (70-118)||(13011578-13011626)
chr8 (71-122)||(42156724-42156775)
chr8 (72-118)||(4491765-4491811)
[»] chr7 (2 HSPs)
chr7 (72-118)||(22720224-22720270)
chr7 (77-121)||(21379003-21379046)
[»] chr5 (4 HSPs)
chr5 (77-122)||(1411630-1411675)
chr5 (75-120)||(26636580-26636625)
chr5 (72-117)||(13861584-13861629)
chr5 (77-121)||(36224831-36224874)
[»] chr1 (7 HSPs)
chr1 (70-120)||(496614-496665)
chr1 (71-118)||(45670774-45670821)
chr1 (90-121)||(11644187-11644218)
chr1 (71-118)||(21355967-21356014)
chr1 (77-122)||(52090396-52090441)
chr1 (77-121)||(15391551-15391594)
chr1 (77-121)||(15903065-15903108)
[»] scaffold0386 (1 HSPs)
scaffold0386 (78-122)||(15197-15241)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 186 - 497
Target Start/End: Complemental strand, 30413866 - 30413552
Alignment:
186 aggggtctatttttactgagagagccgggcctccaattttacaggaacagcatgatgatatctttaattgatggaactgaagaatcttgaattcaccgat 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| |||||| ||||||||||||||||||||||||||||||    
30413866 aggggtctatttttactgagagagccgggcctccaattttacaggaacggcccgatgatatccttaattcatggaactgaagaatcttgaattcaccgat 30413767  T
286 cataagatgatactatgactatgatttatgttatagttgtgatgtgcaatatattcgtgcatctagagcctcttttggttat---tatttaaggaatctt 382  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
30413766 cataagatgatactatgtctatgatttatgttatagttgtgatgtgcaatatattcgtgcatctagagcctcttttggttattattatttaaggaatctt 30413667  T
383 taaatttcatacactgccataccaatcccagtatcccacaacgctatatttaaactattcaactcatattttactccaatgatctgaaaattatgcaact 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||    
30413666 taaatttcatacactgccataccaatcccagtatcccacaacgctatattataactattcaactcatattttactccaatgatctgaaaaatatgcaact 30413567  T
483 ctaacccacactttt 497  Q
    |||||||||||||||    
30413566 ctaacccacactttt 30413552  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 30414046 - 30413937
Alignment:
8 ataatactctctcttctccttctaatttagttaaatcacatatttacaaataaaagaatgacctttgtcgtataaaatcacaaagttctaacaacaaaca 107  Q
    ||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
30414046 ataatactcccacttctccttctaatttagttcaattacatatttacaaataaaagaatgatctttgtcgtataaaatcacaaagttctaacaacaaaca 30413947  T
108 ttataattat 117  Q
    ||||||||||    
30413946 ttataattat 30413937  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 19993769 - 19993723
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||||    
19993769 ttgtcgtataaaatcgcaaagttctaacaacaatcaatataattatt 19993723  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 35656299 - 35656257
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataat 114  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
35656299 ttgttgtataaaataacaaagttctaacaacaaacattataat 35656257  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 52398023 - 52398066
Alignment:
77 gtataaaatcacaaagttctaacaacaaacattataattattttc 121  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||    
52398023 gtataaaataacaaagctctaacaacaaa-attataattattttc 52398066  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 35189914 - 35190018
Alignment:
14 ctctctcttctccttctaatttagttaaatcacatatttacaaataaaagaatgacctttgtcgtataaaatcacaaagttctaacaacaaacattataa 113  Q
    ||||| ||||||||| |||||  ||| ||  |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||    
35189914 ctctcccttctccttataattcggttcaactacatatttacaaataaaaaaatgacctttgtcatataaaatcgcaaagttctaacaacaaacattataa 35190013  T
114 ttatt 118  Q
    |||||    
35190014 ttatt 35190018  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 22469404 - 22469311
Alignment:
24 tccttctaatttagttaaatcacatatttacaaataaaagaatgacctttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    ||||||||||| |||| ||  ||||||||||||||||||||||||| || ||||||| ||||  ||||||||||||||| |||||||||||||||    
22469404 tccttctaattcagttcaactacatatttacaaataaaagaatgacattagtcgtat-aaattgcaaagttctaacaactaacattataattatt 22469311  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 26265235 - 26265189
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    |||| ||||||||| ||||||||||| | ||||||||||||||||||    
26265235 ttgttgtataaaataacaaagttctacccacaaacattataattatt 26265189  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 30714600 - 30714559
Alignment:
73 tgtcgtataaaatcacaaagttctaacaacaaacattataat 114  Q
    ||||||||||||| |||||| ||||| |||||||||||||||    
30714600 tgtcgtataaaatgacaaagctctaataacaaacattataat 30714559  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 12758837 - 12758949
Alignment:
10 aatactctctcttctccttctaatttagttaaatcacatatttacaaataaaagaatgacctttgtcgtataaaatcacaaagttctaacaacaaacatt 109  Q
    ||||||| ||||||||||||||||| | || ||  ||||||||||| ||||||||||   ||||||||||||||||| | ||||| || |||||||||||    
12758837 aatactcactcttctccttctaattcatttgaactacatatttacatataaaagaatcgtctttgtcgtataaaatcgcgaagttataccaacaaacatt 12758936  T
110 ataattattttct 122  Q
    |||||||||||||    
12758937 ataattattttct 12758949  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 39879824 - 39879778
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||||    
39879824 ttgtcgtataaaataacaatgttttaacaacaaacattataattatt 39879778  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 26646672 - 26646718
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    ||||||||||||||| |||| |||||||||||| || ||||||||||    
26646672 ttgtcgtataaaatcgcaaacttctaacaacaatcaatataattatt 26646718  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 29798952 - 29798858
Alignment:
26 cttctaatttagttaaatcacatatttacaaataaaagaatgacctttgtcgtataaaatcacaaagttctaacaacaaacattataattatttt 120  Q
    ||||||||| |||| ||  ||||||||  |||||||||||| | ||||||  ||||||||| |||| ||||||||||||||||||||||||||||    
29798952 cttctaattcagttcaactacatatttgtaaataaaagaataatctttgttatataaaatcgcaaacttctaacaacaaacattataattatttt 29798858  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 54782981 - 54783035
Alignment:
64 aatgacctttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||||||||    
54782981 aatggcctttgtcgtatataatcgcaaagttctaacaacaaacattataattatt 54783035  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 35042909 - 35042955
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||    
35042909 ttgttgtataaaatcacaaagttctaaccagaaacattataattatt 35042955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 24539978 - 24540024
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    |||||||||||||||  |||||||||||||||| || ||||||||||    
24539978 ttgtcgtataaaatcgtaaagttctaacaacaatcaatataattatt 24540024  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 51325346 - 51325392
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    |||| |||||||||| ||||||||||||||||| || ||||||||||    
51325346 ttgtagtataaaatcgcaaagttctaacaacaatcaatataattatt 51325392  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 35430228 - 35430185
Alignment:
77 gtataaaatcacaaagttctaacaacaaacattataattattttc 121  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||    
35430228 gtataaaataacaaagctctaacaacaaa-attataattattttc 35430185  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 108528 - 108574
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||    
108528 ttgtcgtataaaatcacaaagttctaacaacaatcaatataattatt 108574  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 13011626 - 13011578
Alignment:
70 ctttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    |||||||||||| || | |||||||||||||||||||||||||||||||    
13011626 ctttgtcgtatataaacgcaaagttctaacaacaaacattataattatt 13011578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 42156775 - 42156724
Alignment:
71 tttgtcgtataaaatcacaaagttctaacaacaaacattataattattttct 122  Q
    |||||| ||||||||  |||||||||||||||||||||||| ||||||||||    
42156775 tttgtcatataaaatgtcaaagttctaacaacaaacattattattattttct 42156724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 4491765 - 4491811
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    |||||||||||||||  |||||||||||||||| || ||||||||||    
4491765 ttgtcgtataaaatcgtaaagttctaacaacaatcaatataattatt 4491811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 22720224 - 22720270
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
22720224 ttgttgtataaaatcacaaagttctaaccacaaacattataattatt 22720270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 21379003 - 21379046
Alignment:
77 gtataaaatcacaaagttctaacaacaaacattataattattttc 121  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||    
21379003 gtataaaataacaaagctctaacaacaaa-attataattattttc 21379046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 1411630 - 1411675
Alignment:
77 gtataaaatcacaaagttctaacaacaaacattataattattttct 122  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||    
1411630 gtatataatcacaaagttctaaccacaaacattataattattttct 1411675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 26636580 - 26636625
Alignment:
75 tcgtataaaatcacaaagttctaacaacaaacattataattatttt 120  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||    
26636580 tcgtataaaatcacaaagctctatcaacaaacattataattatttt 26636625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 13861584 - 13861629
Alignment:
72 ttgtcgtataaaatcacaaagttctaacaacaaacattataattat 117  Q
    |||| ||||||||| |||||||| |||||| |||||||||||||||    
13861584 ttgttgtataaaataacaaagttataacaaaaaacattataattat 13861629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 36224831 - 36224874
Alignment:
77 gtataaaatcacaaagttctaacaacaaacattataattattttc 121  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||    
36224831 gtataaaataacaaagctctaacaacaaa-attataattattttc 36224874  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 496665 - 496614
Alignment:
70 ctttgtcgtataaaatcacaaagttctaacaacaaacatta-taattatttt 120  Q
    |||||||||||| |||| ||||||||||||||||||||||| ||||||||||    
496665 ctttgtcgtatataatcgcaaagttctaacaacaaacattattaattatttt 496614  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 45670774 - 45670821
Alignment:
71 tttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||||||    
45670774 tttgtcctataaaataacaaagttctaacaacacacattataattatt 45670821  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 121
Target Start/End: Complemental strand, 11644218 - 11644187
Alignment:
90 aagttctaacaacaaacattataattattttc 121  Q
    ||||||||||||||||||||||||||||||||    
11644218 aagttctaacaacaaacattataattattttc 11644187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 21356014 - 21355967
Alignment:
71 tttgtcgtataaaatcacaaagttctaacaacaaacattataattatt 118  Q
    ||||| |||||||||| ||||||||||||||||| || ||||||||||    
21356014 tttgtagtataaaatcgcaaagttctaacaacaatcaatataattatt 21355967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 52090396 - 52090441
Alignment:
77 gtataaaatcacaaagttctaacaacaaacattataattattttct 122  Q
    |||||||||  ||||||| ||||||||||| |||||||||||||||    
52090396 gtataaaatagcaaagttttaacaacaaacgttataattattttct 52090441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 15391551 - 15391594
Alignment:
77 gtataaaatcacaaagttctaacaacaaacattataattattttc 121  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||    
15391551 gtataaaataacaaagctctaacaacaaa-attataattattttc 15391594  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 15903065 - 15903108
Alignment:
77 gtataaaatcacaaagttctaacaacaaacattataattattttc 121  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||    
15903065 gtataaaataacaaagctctaacaacaaa-attataattattttc 15903108  T

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Target: scaffold0386 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 15197 - 15241
Alignment:
78 tataaaatcacaaagttctaacaacaaacattataattattttct 122  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||    
15197 tataaaatagcaaagttttaacaacaaacattataattattttct 15241  T

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