View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17909_low_11 (Length: 497)
Name: NF17909_low_11
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_11 |
 |  |
|
| [»] chr3 (5 HSPs) |
 |  |
|
| [»] scaffold0386 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 186 - 497
Target Start/End: Complemental strand, 30413866 - 30413552
Alignment:
| Q |
186 |
aggggtctatttttactgagagagccgggcctccaattttacaggaacagcatgatgatatctttaattgatggaactgaagaatcttgaattcaccgat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30413866 |
aggggtctatttttactgagagagccgggcctccaattttacaggaacggcccgatgatatccttaattcatggaactgaagaatcttgaattcaccgat |
30413767 |
T |
 |
| Q |
286 |
cataagatgatactatgactatgatttatgttatagttgtgatgtgcaatatattcgtgcatctagagcctcttttggttat---tatttaaggaatctt |
382 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30413766 |
cataagatgatactatgtctatgatttatgttatagttgtgatgtgcaatatattcgtgcatctagagcctcttttggttattattatttaaggaatctt |
30413667 |
T |
 |
| Q |
383 |
taaatttcatacactgccataccaatcccagtatcccacaacgctatatttaaactattcaactcatattttactccaatgatctgaaaattatgcaact |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30413666 |
taaatttcatacactgccataccaatcccagtatcccacaacgctatattataactattcaactcatattttactccaatgatctgaaaaatatgcaact |
30413567 |
T |
 |
| Q |
483 |
ctaacccacactttt |
497 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30413566 |
ctaacccacactttt |
30413552 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 30414046 - 30413937
Alignment:
| Q |
8 |
ataatactctctcttctccttctaatttagttaaatcacatatttacaaataaaagaatgacctttgtcgtataaaatcacaaagttctaacaacaaaca |
107 |
Q |
| |
|
||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30414046 |
ataatactcccacttctccttctaatttagttcaattacatatttacaaataaaagaatgatctttgtcgtataaaatcacaaagttctaacaacaaaca |
30413947 |
T |
 |
| Q |
108 |
ttataattat |
117 |
Q |
| |
|
|||||||||| |
|
|
| T |
30413946 |
ttataattat |
30413937 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 19993769 - 19993723
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
19993769 |
ttgtcgtataaaatcgcaaagttctaacaacaatcaatataattatt |
19993723 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 35656299 - 35656257
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataat |
114 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35656299 |
ttgttgtataaaataacaaagttctaacaacaaacattataat |
35656257 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 52398023 - 52398066
Alignment:
| Q |
77 |
gtataaaatcacaaagttctaacaacaaacattataattattttc |
121 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
52398023 |
gtataaaataacaaagctctaacaacaaa-attataattattttc |
52398066 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 35189914 - 35190018
Alignment:
| Q |
14 |
ctctctcttctccttctaatttagttaaatcacatatttacaaataaaagaatgacctttgtcgtataaaatcacaaagttctaacaacaaacattataa |
113 |
Q |
| |
|
||||| ||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35189914 |
ctctcccttctccttataattcggttcaactacatatttacaaataaaaaaatgacctttgtcatataaaatcgcaaagttctaacaacaaacattataa |
35190013 |
T |
 |
| Q |
114 |
ttatt |
118 |
Q |
| |
|
||||| |
|
|
| T |
35190014 |
ttatt |
35190018 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 22469404 - 22469311
Alignment:
| Q |
24 |
tccttctaatttagttaaatcacatatttacaaataaaagaatgacctttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
22469404 |
tccttctaattcagttcaactacatatttacaaataaaagaatgacattagtcgtat-aaattgcaaagttctaacaactaacattataattatt |
22469311 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 26265235 - 26265189
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
|||| ||||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
26265235 |
ttgttgtataaaataacaaagttctacccacaaacattataattatt |
26265189 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 30714600 - 30714559
Alignment:
| Q |
73 |
tgtcgtataaaatcacaaagttctaacaacaaacattataat |
114 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
30714600 |
tgtcgtataaaatgacaaagctctaataacaaacattataat |
30714559 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 12758837 - 12758949
Alignment:
| Q |
10 |
aatactctctcttctccttctaatttagttaaatcacatatttacaaataaaagaatgacctttgtcgtataaaatcacaaagttctaacaacaaacatt |
109 |
Q |
| |
|
||||||| ||||||||||||||||| | || || ||||||||||| |||||||||| ||||||||||||||||| | ||||| || ||||||||||| |
|
|
| T |
12758837 |
aatactcactcttctccttctaattcatttgaactacatatttacatataaaagaatcgtctttgtcgtataaaatcgcgaagttataccaacaaacatt |
12758936 |
T |
 |
| Q |
110 |
ataattattttct |
122 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12758937 |
ataattattttct |
12758949 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 39879824 - 39879778
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
39879824 |
ttgtcgtataaaataacaatgttttaacaacaaacattataattatt |
39879778 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 26646672 - 26646718
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| || |||||||||| |
|
|
| T |
26646672 |
ttgtcgtataaaatcgcaaacttctaacaacaatcaatataattatt |
26646718 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 29798952 - 29798858
Alignment:
| Q |
26 |
cttctaatttagttaaatcacatatttacaaataaaagaatgacctttgtcgtataaaatcacaaagttctaacaacaaacattataattatttt |
120 |
Q |
| |
|
||||||||| |||| || |||||||| |||||||||||| | |||||| ||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
29798952 |
cttctaattcagttcaactacatatttgtaaataaaagaataatctttgttatataaaatcgcaaacttctaacaacaaacattataattatttt |
29798858 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 54782981 - 54783035
Alignment:
| Q |
64 |
aatgacctttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54782981 |
aatggcctttgtcgtatataatcgcaaagttctaacaacaaacattataattatt |
54783035 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 35042909 - 35042955
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
35042909 |
ttgttgtataaaatcacaaagttctaaccagaaacattataattatt |
35042955 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 24539978 - 24540024
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || |||||||||| |
|
|
| T |
24539978 |
ttgtcgtataaaatcgtaaagttctaacaacaatcaatataattatt |
24540024 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 51325346 - 51325392
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
51325346 |
ttgtagtataaaatcgcaaagttctaacaacaatcaatataattatt |
51325392 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 35430228 - 35430185
Alignment:
| Q |
77 |
gtataaaatcacaaagttctaacaacaaacattataattattttc |
121 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
35430228 |
gtataaaataacaaagctctaacaacaaa-attataattattttc |
35430185 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 108528 - 108574
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
108528 |
ttgtcgtataaaatcacaaagttctaacaacaatcaatataattatt |
108574 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 13011626 - 13011578
Alignment:
| Q |
70 |
ctttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
13011626 |
ctttgtcgtatataaacgcaaagttctaacaacaaacattataattatt |
13011578 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 42156775 - 42156724
Alignment:
| Q |
71 |
tttgtcgtataaaatcacaaagttctaacaacaaacattataattattttct |
122 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
42156775 |
tttgtcatataaaatgtcaaagttctaacaacaaacattattattattttct |
42156724 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 4491765 - 4491811
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || |||||||||| |
|
|
| T |
4491765 |
ttgtcgtataaaatcgtaaagttctaacaacaatcaatataattatt |
4491811 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 22720224 - 22720270
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22720224 |
ttgttgtataaaatcacaaagttctaaccacaaacattataattatt |
22720270 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 21379003 - 21379046
Alignment:
| Q |
77 |
gtataaaatcacaaagttctaacaacaaacattataattattttc |
121 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
21379003 |
gtataaaataacaaagctctaacaacaaa-attataattattttc |
21379046 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 1411630 - 1411675
Alignment:
| Q |
77 |
gtataaaatcacaaagttctaacaacaaacattataattattttct |
122 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1411630 |
gtatataatcacaaagttctaaccacaaacattataattattttct |
1411675 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 26636580 - 26636625
Alignment:
| Q |
75 |
tcgtataaaatcacaaagttctaacaacaaacattataattatttt |
120 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
26636580 |
tcgtataaaatcacaaagctctatcaacaaacattataattatttt |
26636625 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 13861584 - 13861629
Alignment:
| Q |
72 |
ttgtcgtataaaatcacaaagttctaacaacaaacattataattat |
117 |
Q |
| |
|
|||| ||||||||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
13861584 |
ttgttgtataaaataacaaagttataacaaaaaacattataattat |
13861629 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 36224831 - 36224874
Alignment:
| Q |
77 |
gtataaaatcacaaagttctaacaacaaacattataattattttc |
121 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
36224831 |
gtataaaataacaaagctctaacaacaaa-attataattattttc |
36224874 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 496665 - 496614
Alignment:
| Q |
70 |
ctttgtcgtataaaatcacaaagttctaacaacaaacatta-taattatttt |
120 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
496665 |
ctttgtcgtatataatcgcaaagttctaacaacaaacattattaattatttt |
496614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 45670774 - 45670821
Alignment:
| Q |
71 |
tttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
45670774 |
tttgtcctataaaataacaaagttctaacaacacacattataattatt |
45670821 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 121
Target Start/End: Complemental strand, 11644218 - 11644187
Alignment:
| Q |
90 |
aagttctaacaacaaacattataattattttc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11644218 |
aagttctaacaacaaacattataattattttc |
11644187 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 21356014 - 21355967
Alignment:
| Q |
71 |
tttgtcgtataaaatcacaaagttctaacaacaaacattataattatt |
118 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
21356014 |
tttgtagtataaaatcgcaaagttctaacaacaatcaatataattatt |
21355967 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 52090396 - 52090441
Alignment:
| Q |
77 |
gtataaaatcacaaagttctaacaacaaacattataattattttct |
122 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
52090396 |
gtataaaatagcaaagttttaacaacaaacgttataattattttct |
52090441 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 15391551 - 15391594
Alignment:
| Q |
77 |
gtataaaatcacaaagttctaacaacaaacattataattattttc |
121 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
15391551 |
gtataaaataacaaagctctaacaacaaa-attataattattttc |
15391594 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 15903065 - 15903108
Alignment:
| Q |
77 |
gtataaaatcacaaagttctaacaacaaacattataattattttc |
121 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
15903065 |
gtataaaataacaaagctctaacaacaaa-attataattattttc |
15903108 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 15197 - 15241
Alignment:
| Q |
78 |
tataaaatcacaaagttctaacaacaaacattataattattttct |
122 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15197 |
tataaaatagcaaagttttaacaacaaacattataattattttct |
15241 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University