View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_12 (Length: 451)
Name: NF17909_low_12
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 32458590 - 32459024
Alignment:
| Q |
1 |
cgcagatttttgttgacaaaatctccatcaagtcatttcatcaactatcaatttttcaatacatgctcgttcaaaaaacaaggtcaacacatgttgacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
32458590 |
cgcagatttttgttgacaaaatctccatcaagtcatttcattaactatcaatttttcaatacatgttcgttcaaaaaacaaggtcaatacatgttgacac |
32458689 |
T |
|
| Q |
101 |
ttcgataaaaatatagaagttagttcttcttacaaactcaacatgaaagtttctaaaatgattagagaatatatgtctaatcttatcaattattgcacca |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
32458690 |
ttcgataaaaatatagaaattagttcttcttacaaactcaacatgaaagtttctaaaatgattagagaatatatgtctagtcttatgaattattgcacca |
32458789 |
T |
|
| Q |
201 |
aaatctctaaagcattatctttattaagacgaaaactattcaccactcgctttgagtctaactcaaaattcacattgnnnnnnncattgtagatcatgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| || |||||||||||||||| |
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| T |
32458790 |
aaatctctaaagcattatctttattaagacgaaaactattcaccacccgttttgagtctaactcgaaattcactttttttttttcattgtagatcatgac |
32458889 |
T |
|
| Q |
301 |
ccatcacaaagctcacaaaaatatattacttttaggttcgtctaagggagaaccactccgttttggcgagtataaaactgagaaactcatcttagtacac |
400 |
Q |
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||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
32458890 |
ccatcacaaagctcacagaaatatattacctttaggttcgcctaagggagaaccactctgttttggcgagtacaaaattgacaaactcatcttagtacac |
32458989 |
T |
|
| Q |
401 |
ttctccaaaccaactctattgcgttgatgagaaaa |
435 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |
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| T |
32458990 |
ttctccaaaccgactctattgcgttgatgagaaaa |
32459024 |
T |
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