View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_15 (Length: 420)
Name: NF17909_low_15
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 46922448 - 46922047
Alignment:
| Q |
1 |
cttaacgctgagagaatagaagacaaattcatcagctgtagtgacattaaggtgcaagattgtgagacacaatccatgcaaactagaaaccatcttcaag |
100 |
Q |
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| T |
46922448 |
cttaacgctgagagaatagaagacaaattcatcagctgtagtgacattaaggtgcaagattgtgagacacaatccatgcaaactagaaaccatcttcaag |
46922349 |
T |
|
| Q |
101 |
agctgttttggtcttttctttgttcttattttgagatttgcatggctttcaaccattgtcacttcaatatcagcaatattgcgagattgaacctcaccac |
200 |
Q |
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| T |
46922348 |
agctgttttggtcttttctttgttcttattttgagatttgcatggctttcaaccattgtaacttcaatatcagcaatattgcgagattgaacctcaccac |
46922249 |
T |
|
| Q |
201 |
ccatttttgtctcagaactctcacacacaccgtcacttgttgagtattgtggaaaggtaaaaaattcagaaaagggcttgtttttattttcaacaatagt |
300 |
Q |
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| T |
46922248 |
ccatttttgtctcagaactctcacacacaccgtcacttgttgagtattgtggaaaggtaaaaaattcagaaaagggcttgtttttattttcaacaatagt |
46922149 |
T |
|
| Q |
301 |
atcaaatttaccctccttttgtttttgtacaccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46922148 |
atcaaatttaccctccttttgtttttgtacaccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttga |
46922049 |
T |
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| Q |
401 |
tc |
402 |
Q |
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|| |
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| T |
46922048 |
tc |
46922047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 36675815 - 36675915
Alignment:
| Q |
77 |
tgcaaactagaaaccatcttcaagagctgttttggtcttttctttgttcttattttgagatttgcatggctttcaaccattgtcacttcaatatcagcaa |
176 |
Q |
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||||||| ||| || || ||||||||||| ||||| || || ||| ||||||||| |||||||||||| |||| |||||||||||||| || ||||||| |
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| T |
36675815 |
tgcaaaccagatacaattttcaagagctgctttggcctctttcttgatcttattttaagatttgcatggttttccaccattgtcacttctatgtcagcaa |
36675914 |
T |
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| Q |
177 |
t |
177 |
Q |
| |
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| |
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| T |
36675915 |
t |
36675915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 402
Target Start/End: Original strand, 36676080 - 36676152
Alignment:
| Q |
330 |
caccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttgatc |
402 |
Q |
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|||||||||| || | ||| |||||||||| ||||||||||||||||| || ||||| || || |||||||| |
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| T |
36676080 |
caccaagaaaatgaaacttgtgctcaagctctttaacaaagttaatagctcctccaattatagaagcttgatc |
36676152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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