View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_17 (Length: 373)
Name: NF17909_low_17
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 21 - 358
Target Start/End: Original strand, 38180043 - 38180380
Alignment:
| Q |
21 |
ttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgtt |
120 |
Q |
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| T |
38180043 |
ttaccaacgtcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatatagaacttgaatttgtt |
38180142 |
T |
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| Q |
121 |
ctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatat |
220 |
Q |
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| T |
38180143 |
ctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatat |
38180242 |
T |
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| Q |
221 |
tgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataat |
320 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38180243 |
tgaacatgtttcatcctttgatttgtttgtgacgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaactgttgcagcttgaatccataat |
38180342 |
T |
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| Q |
321 |
agcgctgatgggaggtgaagctcacgtgccacctttgc |
358 |
Q |
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| T |
38180343 |
agcgctgatgggaggtgaagctcacgtgccacctttgc |
38180380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 21 - 358
Target Start/End: Original strand, 38184712 - 38185049
Alignment:
| Q |
21 |
ttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgtt |
120 |
Q |
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| T |
38184712 |
ttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactgtagggttggtttcttcatctagaacttgaatttgtt |
38184811 |
T |
|
| Q |
121 |
ctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatat |
220 |
Q |
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| T |
38184812 |
ctttgaaagatcgagtagcgatagtatatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatat |
38184911 |
T |
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| Q |
221 |
tgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataat |
320 |
Q |
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| T |
38184912 |
tgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgttcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataat |
38185011 |
T |
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| Q |
321 |
agcgctgatgggaggtgaagctcacgtgccacctttgc |
358 |
Q |
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| T |
38185012 |
agcgctgatgggaggtgaagctcacgtgccacctttgc |
38185049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 355
Target Start/End: Original strand, 38170261 - 38170563
Alignment:
| Q |
53 |
ttcaaactcttcaacggtgttaacaagtactttagggttggtttcttcat-ctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatat |
151 |
Q |
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||||||||| ||||||||||| ||||||||| | |||||| ||||||||| | | |||| ||||||| ||||||| |||| || ||| | ||||||| | |
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| T |
38170261 |
ttcaaactcctcaacggtgttcacaagtactcttgggttgatttcttcattcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgt |
38170359 |
T |
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| Q |
152 |
atttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtg |
251 |
Q |
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|||||||| |||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| |
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| T |
38170360 |
atttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtg |
38170459 |
T |
|
| Q |
252 |
atgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgcca |
351 |
Q |
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||||||||||| || |||||||||||||||||| | |||||||| |||||||| ||||||||||| || || | ||||||||||||||||||| |||||| |
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| T |
38170460 |
atgtagtcaccgtgttcatgaaagtaataatagaatatatcaaacaccgttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgcca |
38170559 |
T |
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| Q |
352 |
cctt |
355 |
Q |
| |
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|||| |
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| T |
38170560 |
cctt |
38170563 |
T |
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