View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_19 (Length: 358)
Name: NF17909_low_19
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 50762736 - 50763053
Alignment:
| Q |
16 |
aaattatctttagtatataacttgttttgaagcaatccccatacaaacaaataaatcttcaacggtaccacttttatccaaacaatatcatagaggattg |
115 |
Q |
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| T |
50762736 |
aaattatctttagtatataacttggtttgaagcaatccccatacaaacaaataaatcttcaacggtatcacttttatccaaacaatatcatagaggattg |
50762835 |
T |
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| Q |
116 |
agctatcctttgacatttccatgaccaacaaatgataaacaccactaattgagtatcctttgtccgaatataacttccatttccatttgtcatgcacacc |
215 |
Q |
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| T |
50762836 |
atctatcctttgacatttccatgaccaacaaatgataaacaccactgattgagtatcctttgtccgaatataacttccatttccatttgt-atgcacacc |
50762934 |
T |
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| Q |
216 |
aatatatnnnnnnngttaaacaacaagag---actacactcctcaaccttaaaagtacacatcttagctacttccacccatcttctcctacatcccactc |
312 |
Q |
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| T |
50762935 |
aatatgtaaaaaaagttaaacaacaagagactactacactcctcaacctt-aaagtacacatcttagctacttccacccatcttctcctacatcccactc |
50763033 |
T |
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| Q |
313 |
accttaaagtacacatccca |
332 |
Q |
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|||||||||||||||||||| |
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| T |
50763034 |
accttaaagtacacatccca |
50763053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 39280453 - 39280512
Alignment:
| Q |
74 |
tcaacggtaccacttttatccaaacaatatcatagaggattgagctatcctttgacattt |
133 |
Q |
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|||| ||||| |||||||||||||||||||||||||||| ||| |||| ||||||||| |
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| T |
39280453 |
tcaatggtactacttttatccaaacaatatcatagaggagtgatatatctcttgacattt |
39280512 |
T |
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