View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_20 (Length: 358)
Name: NF17909_low_20
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 151 - 347
Target Start/End: Complemental strand, 17922811 - 17922608
Alignment:
| Q |
151 |
gttatggaaattcataaactgtaacttttacacctgattgtaaattgtaaagg-----taatgtttgctggtatttttcttttaatatcttgtatcattt |
245 |
Q |
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| T |
17922811 |
gttatggaaattcataaattataacttttacacccgagtgtaaattgtaaagtaaagataatgtttgctggtttttttcttttaatatcttgtataattt |
17922712 |
T |
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| Q |
246 |
atgttttttcctcttctcactcatttgtataatttgttttagacctat--acaactctaccaacatttccatcatataaagtattcacgtctgatactat |
343 |
Q |
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| T |
17922711 |
atgctttttcctcttttcactcatttgtacaatttgttttagacctatacacaactctacctacatttccatcatataaagtattcacgtctgatactat |
17922612 |
T |
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| Q |
344 |
tcat |
347 |
Q |
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|||| |
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| T |
17922611 |
tcat |
17922608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 17923137 - 17923002
Alignment:
| Q |
33 |
aatttactccccgttactgcgacgcatttatatattatgagaagcttggttggtatatttatatgttttaatttaacttgattgaatgtgtaaaaacagt |
132 |
Q |
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| T |
17923137 |
aatttactacccgttactgcgacacatttatatattatgagaagcttggttggtatatttatatgttttaatttaacttgagagaatgtgtaaaaacagt |
17923038 |
T |
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| Q |
133 |
agctgtaaatatttattagttatggaaattcataaa |
168 |
Q |
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| T |
17923037 |
agcagtaaatactgattagttatggaaattcataaa |
17923002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 149 - 278
Target Start/End: Complemental strand, 17970030 - 17969898
Alignment:
| Q |
149 |
tagttatggaaattcataaactgtaacttttacacctgattgtaaattgtaaaggtaatgtttgctg---gtatttttcttttaatatcttgtatcattt |
245 |
Q |
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|||||||||||||||| ||| ||||||||||||||| || || |||||||||||||||||||||||| | ||||||| |||| ||||| ||| |||| |
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| T |
17970030 |
tagttatggaaattcaaaaattgtaacttttacacccgagtgaaaattgtaaaggtaatgtttgctgtttttttttttctcttaaaatcttatataattt |
17969931 |
T |
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| Q |
246 |
atgttttttcctcttctcactcatttgtataat |
278 |
Q |
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||| |||| |||||| |||| |||||||||||| |
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| T |
17969930 |
atgcttttccctcttttcacacatttgtataat |
17969898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 32357068 - 32357016
Alignment:
| Q |
61 |
tatatattatgagaagcttggttggtatatttatatgttttaatttaacttga |
113 |
Q |
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| T |
32357068 |
tataaattatgacaagcttggtgcgtatatttatatgttttaatttaacttga |
32357016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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