View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_21 (Length: 321)
Name: NF17909_low_21
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 38180711 - 38180419
Alignment:
| Q |
11 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180711 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
38180612 |
T |
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| Q |
111 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180611 |
tacttacacactcgccttaccaacaaatcaaccatctcgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
38180512 |
T |
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| Q |
211 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180511 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccat |
38180419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 38185380 - 38185088
Alignment:
| Q |
11 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
38185380 |
catcatcacatacccactacacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatc |
38185281 |
T |
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| Q |
111 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
210 |
Q |
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|||||||||||| |||||| ||||||| |||||||||| ||||| |||||||||||||||||||| ||| ||||||| || ||| ||||||||||||| |
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| T |
38185280 |
tacttacacactggccttatcaacaaaccaaccatcccaggcctctccttcgccaccttctctgatggctacgacgacggtaaaaatttcgaaagcaacg |
38185181 |
T |
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| Q |
211 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccat |
303 |
Q |
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||||||| || ||||| || ||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38185180 |
aagacttcatcgcctacaggtccgagcttaagtgccactgctcagaatttctaacaaatatcatactctccggcaaacaggaaggtcgtccat |
38185088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 38170897 - 38170627
Alignment:
| Q |
11 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
110 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38170897 |
catcataacatacccactacaaggtcacataaaccctgccctccaattcaccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatc |
38170798 |
T |
|
| Q |
111 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
210 |
Q |
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||||| ||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||| || | ||||| | || ||| |
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| T |
38170797 |
cacttatacagtcgccttatcaacaaaccaaccatcccgggcctctccttcgccaccttctctgacggctatgacgacggtcaaaaatcctttggcgacg |
38170698 |
T |
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| Q |
211 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctcc |
281 |
Q |
| |
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||||| | ||| ||||| || |||| ||| ||| ||| |||| |||||||||||||||||||| |||||| |
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| T |
38170697 |
aagacatcgtctcctacatgtctgagtttacgcgtcgcggctcagaatttctcacaaatatcattctctcc |
38170627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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