View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_22 (Length: 315)
Name: NF17909_low_22
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 38180701 - 38181001
Alignment:
| Q |
12 |
atgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagtagagtaaaggaagtgtgatatgcaac |
111 |
Q |
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| T |
38180701 |
atgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagtagagtaaaggaagtgtgatatgcaac |
38180800 |
T |
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| Q |
112 |
ggttatgcatgtatatggatggatagcataagccaagtgtttttatacaagtggtgtccatgctgacgttcgggatgaccaagtactgtggggtactcat |
211 |
Q |
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| T |
38180801 |
ggttatgaatgtatatggatggatagcataagctaagtgtttttatacaagtggtgtccatgctgacgttcgggatgaccaagttctgtggggtactcat |
38180900 |
T |
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| Q |
212 |
ctataagcatgnnnnnnnacaactcatttatctcttgatccttgttaatagtttttcttagaatcttttt-tatccactcctaccgttgatgatctgact |
310 |
Q |
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| T |
38180901 |
ccataagcatgtttttctacaactcatttatctcttgatccttgttaatagtttttcttagaatctttttacatccagtcctaccgttgatgatctgact |
38181000 |
T |
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| Q |
311 |
c |
311 |
Q |
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| T |
38181001 |
c |
38181001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 38185370 - 38185435
Alignment:
| Q |
12 |
atgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcac |
77 |
Q |
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| T |
38185370 |
atgtgatgatgaggaagtggtggttttgcgccatggtaatggtggcttgtgaaaatgcaatagcac |
38185435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 38170887 - 38170947
Alignment:
| Q |
12 |
atgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaat |
72 |
Q |
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| T |
38170887 |
atgttatgatgaggaagtggtggttttgcgccatggtagtggtggattgtgaaaatgcaat |
38170947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 17213264 - 17213226
Alignment:
| Q |
232 |
aactcatttatctcttgatccttgttaatagtttttctt |
270 |
Q |
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| T |
17213264 |
aactcattaatctctagatccttgttaatagtttttctt |
17213226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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