View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_24 (Length: 306)
Name: NF17909_low_24
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 60 - 290
Target Start/End: Original strand, 26964305 - 26964535
Alignment:
| Q |
60 |
cattccttcaagataggaaagattcaaaaaacgagtcatcttctacaggctcctctttggctctacctctaataatattattaacacgtagttgattcat |
159 |
Q |
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| T |
26964305 |
cattccttcaagataggaaagattcaaaaaacgagtcatcttctacaggctcctctttggctctacctctaataatattattaacacgttgttgattcat |
26964404 |
T |
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| Q |
160 |
attcatgtaagaatccaccgtgaatccattgttctgcatcatctcatggttgaagaatccattattaactgaagtgttgttgatggaattgttggtgttg |
259 |
Q |
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| T |
26964405 |
attcatgtaagaatccaccgtgaatccattgttctgcatcatctcatggttgaagaatccattattaactgaagtgttgttgatggaattgttggtgttg |
26964504 |
T |
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| Q |
260 |
ttcatagttgtttgaattggtagtggtttgt |
290 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
26964505 |
ttcatagttgtttgaattggtagtggtttgt |
26964535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 26964191 - 26964247
Alignment:
| Q |
5 |
tgaaatgaggtcgatcttattagtcataagtatatgtatatataaaaccctaaacca |
61 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26964191 |
tgaaatgaagtcgatcttattagtcataagtatatgtatatataaaaccctaaacca |
26964247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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