View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17909_low_26 (Length: 300)
Name: NF17909_low_26
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17909_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 32662802 - 32662525
Alignment:
| Q |
18 |
gttaaaaacctagaaaactagcaattatcataggtacaattcccccaactaattagtctacaaataaacattatgaatattcaagcggctcagattaatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32662802 |
gttaaaaacctagaaaactagcaattatcataggtacaattcccccaactaattagtctacaaataaacattatgaatattcaagcggctcagattaatg |
32662703 |
T |
|
| Q |
118 |
caacctgaaaggaatcataatcataatatattatggtattttgattatatgctagttcccagtacaaattaagctaagactctctttggcaagataaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32662702 |
caacctgaaaggaatcataatcataatatattatggtattttgattatatgctagttcccagtacaaattaagctaagactctctttggcaagataaaat |
32662603 |
T |
|
| Q |
218 |
gagctgatagcttattagcttatagcctataaactcataggaccaaaattgacctgtctgataacaatttcttctcac |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32662602 |
gagctgatagcttattagcttatagcctataaactcataggaccaaaattgacctgtctgataacaattttttctcac |
32662525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 22007623 - 22007478
Alignment:
| Q |
18 |
gttaaaaacctagaaaactagcaattatcataggtacaattcccccaactaattagtctacaaataaacattatgaatattcaagcggctcagattaatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22007623 |
gttaaaaacctagaaaactagcaattatcataggtacaattcccc-aactaattagtctacaaataaacattatgaatattcaagcggctcagattaatg |
22007525 |
T |
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| Q |
118 |
caacctgaaaggaatcataatcataatatattatggtattttgatta |
164 |
Q |
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| T |
22007524 |
caacctgaaaggaatcatactcataatatattatggtattttgatta |
22007478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 44301043 - 44300898
Alignment:
| Q |
18 |
gttaaaaacctagaaaactagcaattatcataggtacaattcccccaactaattagtctacaaataaacattatgaatattcaagcggctcagattaatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44301043 |
gttaaaaacctagaaaactagcaattatcataggtacaattcccc-aactaattagtctacaaataaacattatgaatattcaagcggctcagattaatg |
44300945 |
T |
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| Q |
118 |
caacctgaaaggaatcataatcataatatattatggtattttgatta |
164 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44300944 |
caacctgaaaggaatcatactcataatatattatggtattttgatta |
44300898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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