View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17909_low_28 (Length: 288)

Name: NF17909_low_28
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17909_low_28
NF17909_low_28
[»] chr1 (7 HSPs)
chr1 (4-282)||(64696-64975)
chr1 (1-50)||(31061918-31061969)
chr1 (172-241)||(12590669-12590738)
chr1 (1-50)||(30795696-30795747)
chr1 (5-46)||(35951726-35951769)
chr1 (214-246)||(37976821-37976853)
chr1 (1-50)||(47417778-47417829)
[»] chr6 (6 HSPs)
chr6 (1-44)||(3808133-3808178)
chr6 (1-50)||(29335590-29335641)
chr6 (1-52)||(28951392-28951445)
chr6 (1-51)||(2213291-2213343)
chr6 (1-51)||(32409193-32409245)
chr6 (1-50)||(34481429-34481480)
[»] chr7 (3 HSPs)
chr7 (184-245)||(28733809-28733870)
chr7 (169-206)||(15995921-15995958)
chr7 (4-45)||(24559494-24559537)
[»] chr2 (4 HSPs)
chr2 (1-50)||(13196695-13196746)
chr2 (1-44)||(33966322-33966367)
chr2 (1-50)||(19549431-19549482)
chr2 (1-50)||(26400746-26400797)
[»] chr5 (5 HSPs)
chr5 (1-44)||(11647198-11647243)
chr5 (1-44)||(16579389-16579434)
chr5 (1-50)||(18589882-18589933)
chr5 (1-50)||(30893928-30893979)
chr5 (214-246)||(36160312-36160344)
[»] chr4 (8 HSPs)
chr4 (1-40)||(6520076-6520117)
chr4 (4-50)||(15170117-15170165)
chr4 (1-42)||(3970020-3970063)
chr4 (1-50)||(11144680-11144731)
chr4 (1-50)||(16451204-16451255)
chr4 (4-45)||(44689492-44689535)
chr4 (3-52)||(45970724-45970775)
chr4 (1-50)||(51436621-51436672)
[»] chr3 (2 HSPs)
chr3 (1-46)||(21914086-21914133)
chr3 (1-46)||(25505716-25505763)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 282
Target Start/End: Original strand, 64696 - 64975
Alignment:
Q  4 ttgcatatattatgcattgt--ttactaactgagttaagttcatgaggatagatagtgactttattataacgagtaaccctagtatttttcttgtctata 101  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||    
T  64696 ttgcatatattatgcattgtccttactaattgagttaagttcatgaggacagatagtgactttattataacgagtaaccctagcatatttcttgtctata 64795  T
Q  102 ttatcataacgatgaatgctaataatactcacttatcaacgctctttctagcacccgctctttgcaataatcaatgcaatgaaattcgaaatatttaact 201  Q
    |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||     
T  64796 ttattataacaatgaatgctaacaatactcacttatcaacactctttctagcaccctctcttttcaataatcaatgcaatgaaattcgaaatatttaacg 64895  T
Q  202 tttttnnnnnnntaattgtttattttagaatgcttaaagagtgtctagtcacacgttaacgagactcaatagaataatcta 282  Q
    |||||       |||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  64896 ttttt-aaagaataattgtttattttagaatgtttaaagagtatgtagtcacacgttaacgagactcaatagaataatcta 64975  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31061918 - 31061969
Alignment:
Q  1 accttgcatatattatgcattgt--ttactaactgagttaagttcatgagga 50  Q
    |||||||||||| ||||||||||  |||| ||||||||||||||||||||||    
T  31061918 accttgcatataatatgcattgtccttaccaactgagttaagttcatgagga 31061969  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 12590669 - 12590738
Alignment:
Q  172 tcaatgcaatgaaattcgaaatatttaacttttttnnnnnnntaattgtttattttagaatgcttaaaga 241  Q
    |||||||| ||||| || |||||||||||||||||       |||||||||| |||| ||||||||||||    
T  12590669 tcaatgcattgaaaatcaaaatatttaactttttttaatagataattgtttaatttaaaatgcttaaaga 12590738  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30795747 - 30795696
Alignment:
Q  1 accttgcatatattatgcattgt--ttactaactgagttaagttcatgagga 50  Q
    |||||||||||||||||||||||  |||| ||||||| |||||||| |||||    
T  30795747 accttgcatatattatgcattgttcttaccaactgagctaagttcacgagga 30795696  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 35951726 - 35951769
Alignment:
Q  5 tgcatatattatgcattgtt--tactaactgagttaagttcatg 46  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  35951726 tgcatatattatgcaatgttcctactaactgagttaagttcatg 35951769  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 37976853 - 37976821
Alignment:
Q  214 taattgtttattttagaatgcttaaagagtgtc 246  Q
    ||||| |||||||||||||||||||||||||||    
T  37976853 taattttttattttagaatgcttaaagagtgtc 37976821  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47417829 - 47417778
Alignment:
Q  1 accttgcatatattatgcattgt--ttactaactgagttaagttcatgagga 50  Q
    |||||||||||||||||||||||  | || || |||||||||||||||||||    
T  47417829 accttgcatatattatgcattgtcctaaccaattgagttaagttcatgagga 47417778  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3808133 - 3808178
Alignment:
Q  1 accttgcatatattatgcattgt--ttactaactgagttaagttca 44  Q
    |||||||||||||||||||||||  |||||||||||||||||||||    
T  3808133 accttgcatatattatgcattgtccttactaactgagttaagttca 3808178  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29335590 - 29335641
Alignment:
Q  1 accttgcatatattatgcattgtt--tactaactgagttaagttcatgagga 50  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||| |||||    
T  29335590 accttgcatatattatgcattgtttatactaactgagttaagctcacgagga 29335641  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28951445 - 28951392
Alignment:
Q  1 accttgcatatattatgcattgtt--tactaactgagttaagttcatgaggata 52  Q
    ||||||||||||||||||||||||  ||| |||||||||||| ||| |||||||    
T  28951445 accttgcatatattatgcattgttcataccaactgagttaagctcacgaggata 28951392  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2213343 - 2213291
Alignment:
Q  1 accttgcatatattatgcattgt--ttactaactgagttaagttcatgaggat 51  Q
    |||||||||||||||||||||||  |||| || ||||||||||||| ||||||    
T  2213343 accttgcatatattatgcattgttcttaccaattgagttaagttcacgaggat 2213291  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32409193 - 32409245
Alignment:
Q  1 accttgcatatattatgcattgt--ttactaactgagttaagttcatgaggat 51  Q
    ||||| |||||||||||||||||  |||| |||| ||||||||||||||||||    
T  32409193 accttacatatattatgcattgtctttaccaactcagttaagttcatgaggat 32409245  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34481429 - 34481480
Alignment:
Q  1 accttgcatatattatgcattgtt--tactaactgagttaagttcatgagga 50  Q
    ||||||||||||| ||||||||||  |||||||||||||||| | |||||||    
T  34481429 accttgcatatataatgcattgttcatactaactgagttaagcttatgagga 34481480  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 28733809 - 28733870
Alignment:
Q  184 aattcgaaatatttaacttttttnnnnnnntaattgtttattttagaatgcttaaagagtgt 245  Q
    ||||| |||||||||||||||||       ||||||||||||||| ||||||||||||||||    
T  28733809 aattcaaaatatttaactttttttaaagaataattgtttattttaaaatgcttaaagagtgt 28733870  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 15995958 - 15995921
Alignment:
Q  169 taatcaatgcaatgaaattcgaaatatttaactttttt 206  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  15995958 taatcaatgcattgaaaatcgaaatatttaactttttt 15995921  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 24559494 - 24559537
Alignment:
Q  4 ttgcatatattatgcattgtt--tactaactgagttaagttcat 45  Q
    |||||||||||||||||||||  |||||||||||||||| ||||    
T  24559494 ttgcatatattatgcattgttcctactaactgagttaagctcat 24559537  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13196746 - 13196695
Alignment:
Q  1 accttgcatatattatgcattgtt--tactaactgagttaagttcatgagga 50  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||| |||||    
T  13196746 accttgcatatattatgcattgttcataccaactgagttaagttcacgagga 13196695  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33966367 - 33966322
Alignment:
Q  1 accttgcatatattatgcattgtt--tactaactgagttaagttca 44  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||    
T  33966367 accttgcatatattatgcattgttcataccaactgagttaagttca 33966322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19549482 - 19549431
Alignment:
Q  1 accttgcatatattatgcattgtt--tactaactgagttaagttcatgagga 50  Q
    ||||||||||||||||||||||||  ||| | |||||||||| |||||||||    
T  19549482 accttgcatatattatgcattgttcataccagctgagttaagctcatgagga 19549431  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26400797 - 26400746
Alignment:
Q  1 accttgcatatattatgcattgt--ttactaactgagttaagttcatgagga 50  Q
    |||||||||||||||||||||||  |||| |||||||| ||| |||||||||    
T  26400797 accttgcatatattatgcattgtccttaccaactgagtaaagctcatgagga 26400746  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11647243 - 11647198
Alignment:
Q  1 accttgcatatattatgcattgt--ttactaactgagttaagttca 44  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||    
T  11647243 accttgcatatattatgcattgtccttaccaactgagttaagttca 11647198  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16579389 - 16579434
Alignment:
Q  1 accttgcatatattatgcattgtt--tactaactgagttaagttca 44  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||    
T  16579389 accttgcatatattatgcattgttcataccaactgagttaagttca 16579434  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18589882 - 18589933
Alignment:
Q  1 accttgcatatattatgcattgtt--tactaactgagttaagttcatgagga 50  Q
    ||||||||||||||||||||||||  ||| |||||||||||| ||| |||||    
T  18589882 accttgcatatattatgcattgttcataccaactgagttaagctcacgagga 18589933  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30893979 - 30893928
Alignment:
Q  1 accttgcatatattatgcattg--tttactaactgagttaagttcatgagga 50  Q
    ||||||||||||||||||||||  ||||| |||||||||||| ||| |||||    
T  30893979 accttgcatatattatgcattgtctttacaaactgagttaagctcacgagga 30893928  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 36160344 - 36160312
Alignment:
Q  214 taattgtttattttagaatgcttaaagagtgtc 246  Q
    |||||| ||||||||||||||||||||||||||    
T  36160344 taattgcttattttagaatgcttaaagagtgtc 36160312  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6520117 - 6520076
Alignment:
Q  1 accttgcatatattatgcattg--tttactaactgagttaag 40  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  6520117 accttgcatatattatgcattgtctttactaactgagttaag 6520076  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 15170117 - 15170165
Alignment:
Q  4 ttgcatatattatgcattgtt--tactaactgagttaagttcatgagga 50  Q
    |||||||||||||||||||||  ||| |||||||||||||||| |||||    
T  15170117 ttgcatatattatgcattgttcataccaactgagttaagttcacgagga 15170165  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3970020 - 3970063
Alignment:
Q  1 accttgcatatattatgcattgt--ttactaactgagttaagtt 42  Q
    |||||||||||||||| ||||||  |||||||||||||||||||    
T  3970020 accttgcatatattatacattgtctttactaactgagttaagtt 3970063  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11144680 - 11144731
Alignment:
Q  1 accttgcatatattatgcattg--tttactaactgagttaagttcatgagga 50  Q
    ||||||||||||||||||||||  ||||  ||||||| ||||||||||||||    
T  11144680 accttgcatatattatgcattgtctttatcaactgaggtaagttcatgagga 11144731  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 16451255 - 16451204
Alignment:
Q  1 accttgcatatattatgcattgtt--tactaactgagttaagttcatgagga 50  Q
    |||||||||| |||||||||||||  ||| |||||||||||||||| |||||    
T  16451255 accttgcataaattatgcattgtttgtaccaactgagttaagttcacgagga 16451204  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 44689535 - 44689492
Alignment:
Q  4 ttgcatatattatgcattgt--ttactaactgagttaagttcat 45  Q
    ||||||||||||||||||||  |||| |||||||||||||||||    
T  44689535 ttgcatatattatgcattgttcttaccaactgagttaagttcat 44689492  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 45970724 - 45970775
Alignment:
Q  3 cttgcatatattatgcattgtt--tactaactgagttaagttcatgaggata 52  Q
    ||||||||||||||||||||||  ||| |||||||||||| ||| |||||||    
T  45970724 cttgcatatattatgcattgtttctaccaactgagttaagctcacgaggata 45970775  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 51436621 - 51436672
Alignment:
Q  1 accttgcatatattatgcattgtt--tactaactgagttaagttcatgagga 50  Q
    ||||||||||||||||||||||||  ||  |||||||||||||||| |||||    
T  51436621 accttgcatatattatgcattgttcgtatcaactgagttaagttcacgagga 51436672  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21914086 - 21914133
Alignment:
Q  1 accttgcatatattatgcattgt--ttactaactgagttaagttcatg 46  Q
    |||||||||||||||||||||||  |||| |||||||||||| |||||    
T  21914086 accttgcatatattatgcattgtccttaccaactgagttaagctcatg 21914133  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25505716 - 25505763
Alignment:
Q  1 accttgcatatattatgcattgt--ttactaactgagttaagttcatg 46  Q
    |||||||||||||||||||||||  |||| |||||||||||| |||||    
T  25505716 accttgcatatattatgcattgtccttacaaactgagttaagctcatg 25505763  T

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