View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17909_low_3 (Length: 662)

Name: NF17909_low_3
Description: NF17909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17909_low_3
NF17909_low_3
[»] chr1 (4 HSPs)
chr1 (17-651)||(34593238-34593893)
chr1 (53-144)||(34577932-34578023)
chr1 (258-353)||(34577750-34577845)
chr1 (460-516)||(34577609-34577665)
[»] chr6 (8 HSPs)
chr6 (53-143)||(32590173-32590263)
chr6 (53-143)||(32600621-32600711)
chr6 (57-143)||(24883687-24883773)
chr6 (258-355)||(32589981-32590078)
chr6 (258-355)||(32600429-32600526)
chr6 (457-516)||(32589846-32589905)
chr6 (457-516)||(32600294-32600353)
chr6 (459-521)||(24884037-24884099)
[»] chr7 (2 HSPs)
chr7 (57-95)||(27526724-27526762)
chr7 (57-95)||(27532378-27532416)


Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 17 - 651
Target Start/End: Complemental strand, 34593893 - 34593238
Alignment:
Q  17 agaatattgcactcagaaattaattgcttcttgaattattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34593893 agaatattgcactcagaaattaattgcttcttgaattattagatcctgacatgcttgaggttgggaatggaggcatgactacagaagaatatcgttcaca 34593794  T
Q  117 tttcagcatatgggctttagctaaggtatgatg-----aaacaaaatttagatactta-----------------gtattgtgatggcattgccattgtc 194  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||||||                 |||||||||||||||||||||||||    
T  34593793 tttcagcatatgggctttagctaaggtatgatgtgatgaaacaaaatttagatacttaccagcccttgacttctagtattgtgatggcattgccattgtc 34593694  T
Q  195 atgacatcctttaagcaaatcgtttttgatttttcactaaattggtttcttttgtatatactgataggctcctttattggttggttgtgatattcgtgca 294  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34593693 atgacatcctttaagcaaattgtttttgatttttcactaaattggtttcttttgtatataatgataggctcctttattggttggttgtgatattcgtgca 34593594  T
Q  295 atggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaattactagaaagacaaaa 394  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593593 atggataataccacatatgaattaataactaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaattactagaaagacaaaa 34593494  T
Q  395 gcattgctttcttctatatgtcaatacgatataacactcaaaaaatctaattttccttctgttattgcagataaactaggagttcaaggaaagaaagtga 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34593493 gcattgctttcttctatatgtcaatacgatataacactcaaaaaatcaaattttccttctgttattgcagacaaactaggagttcaaggaaagaaagtga 34593394  T
Q  495 aaagtactaatgatttggaggtaattttcttgttttttgatcccatgatttcatacactatccnnnnnnnnnaataaaatttttgaggtaggcgttagag 594  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||         |||||||||||||||||||||| |||||    
T  34593393 aaagtactaatgatttggaggtaactttcttgt-ttttgatcccttgatttcatacactatcctttttttttaataaaatttttgaggtaggcggtagag 34593295  T
Q  595 gatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgat 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34593294 gatggaagttctccgaggtgccagcaaccagttgagatgtcggtgtttcctcttgat 34593238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 34578023 - 34577932
Alignment:
Q  53 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggta 144  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||| | ||||||||||| ||||| ||||||||||||    
T  34578023 tattagatcctgatatgcttgaagttggaaatggaggcatgaccacagaggaatatcgtgcccatttcagcatttgggcattagctaaggta 34577932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 34577845 - 34577750
Alignment:
Q  258 ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaagg 353  Q
    ||||||||||||||| ||||| ||| ||||||  |||||||||| ||||||||||||| | |||| |||||| |||||||||||||||||||||||    
T  34577845 ataggctcctttattagttggatgtaatattcaagcaatggataataccacatatgaattgataagcaactcagaagttattgcagtaaaccaagg 34577750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 34577665 - 34577609
Alignment:
Q  460 tgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt 516  Q
    |||||||||||| |||||||| ||||||||||| ||||| |  |||||||| |||||    
T  34577665 tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt 34577609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 32590263 - 32590173
Alignment:
Q  53 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt 143  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||    
T  32590263 tattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagcatctgggcattagctaaggt 32590173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 32600711 - 32600621
Alignment:
Q  53 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt 143  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||    
T  32600711 tattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagcatctgggcattagctaaggt 32600621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 24883687 - 24883773
Alignment:
Q  57 agatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt 143  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||| |||| ||||||    
T  24883687 agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatatcgtgcccatttcagcatatgggcattagttaaggt 24883773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 32590078 - 32589981
Alignment:
Q  258 ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta 355  Q
    |||||| |||||||| ||||||||| ||||||  |||||||||| || ||| |||||| | |||| |||||| |||||||||||||||||||||||||    
T  32590078 ataggcccctttattagttggttgtaatattcaagcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta 32589981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 32600526 - 32600429
Alignment:
Q  258 ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta 355  Q
    |||||| |||||||| ||||||||| ||||||  |||||||||| || ||| |||||| | |||| |||||| |||||||||||||||||||||||||    
T  32600526 ataggcccctttattagttggttgtaatattcaagcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta 32600429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 516
Target Start/End: Complemental strand, 32589905 - 32589846
Alignment:
Q  457 tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt 516  Q
    ||||||||||||||| |||||||| ||||||||||| ||||| |  |||||||| |||||    
T  32589905 tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt 32589846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 516
Target Start/End: Complemental strand, 32600353 - 32600294
Alignment:
Q  457 tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt 516  Q
    ||||||||||||||| |||||||| ||||||||||| ||||| |  |||||||| |||||    
T  32600353 tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt 32600294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 521
Target Start/End: Original strand, 24884037 - 24884099
Alignment:
Q  459 ttgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt 521  Q
    ||||||| ||| ||||| ||||||| ||||| |||||||||| | ||||||||||||| ||||    
T  24884037 ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt 24884099  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 27526724 - 27526762
Alignment:
Q  57 agatcctgacatgcttgaggttggaaatggaggcatgac 95  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27526724 agatcctgacatgcttgaggttggaaatggagggatgac 27526762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 27532378 - 27532416
Alignment:
Q  57 agatcctgacatgcttgaggttggaaatggaggcatgac 95  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  27532378 agatcctgatatgcttgaggttggaaatggagggatgac 27532416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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